7ZRD
Cryo-EM map of the WT KdpFABC complex in the E1-P tight conformation, stabilised with the inhibitor orthovanadate
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | Metal cation-transporting ATPase, ATP-binding domain N | 8036482 | 3000981 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth C] | F_UNCLASSIFIED | e7zrdC1 | A: alpha arrays | X: Potassium-transporting ATPase KdpC subunit (From Topology) | H: Potassium-transporting ATPase KdpC subunit (From Topology) | T: Potassium-transporting ATPase KdpC subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e7zrdA2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: F_UNCLASSIFIED | ECOD (1.6) |
A | TrkH_3rd | e7zrdA3 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: TrkH_3rd | ECOD (1.6) |
D [auth B] | E1-E2_ATPase_N | e7zrdB2 | A: beta sandwiches | X: jelly-roll | H: Calcium ATPase, transduction domain A (From Topology) | T: Calcium ATPase, transduction domain A | F: E1-E2_ATPase_N | ECOD (1.6) |
D [auth B] | F_UNCLASSIFIED | e7zrdB4 | A: alpha bundles | X: Calcium ATPase transmembrane domain-related (From Homology) | H: Calcium ATPase transmembrane domain-related | T: Potassium-transporting ATPase subunit KdpB transmembrane domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth B] | PRK01122 | e7zrdB3 | A: a+b complex topology | X: Metal cation-transporting ATPase, ATP-binding domain (From Topology) | H: Metal cation-transporting ATPase, ATP-binding domain (From Topology) | T: Metal cation-transporting ATPase, ATP-binding domain | F: PRK01122 | ECOD (1.6) |
D [auth B] | Hydrolase_3_1 | e7zrdB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: HAD-like | F: Hydrolase_3_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth C] | PF02669 | K+-transporting ATPase, c chain (KdpC) | K+-transporting ATPase, c chain | - | Family |
PF03814 | Potassium-transporting ATPase A subunit (KdpA) | Potassium-transporting ATPase A subunit | - | Family | |
C [auth D] | PF09604 | F subunit of K+-transporting ATPase (Potass_KdpF) (Potass_KdpF) | F subunit of K+-transporting ATPase (Potass_KdpF) | - | Family |
D [auth B] | PF00702 | haloacid dehalogenase-like hydrolase (Hydrolase) | haloacid dehalogenase-like hydrolase | This family is structurally different from the alpha/beta hydrolase family (Pfam:PF00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted fo ... | Domain |
D [auth B] | PF00122 | E1-E2 ATPase (E1-E2_ATPase) | E1-E2 ATPase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth C] | IPR003820 | Potassium-transporting ATPase C chain | Family |
IPR004623 | Potassium-transporting ATPase A chain | Family | |
C [auth D] | IPR011726 | K+ transporting P-type ATPase, F subunit | Family |
D [auth B] | IPR023214 | HAD superfamily | Homologous Superfamily |
D [auth B] | IPR008250 | P-type ATPase, A domain superfamily | Homologous Superfamily |
D [auth B] | IPR001757 | P-type ATPase | Family |
D [auth B] | IPR044492 | P-type ATPase, haloacid dehalogenase domain | Domain |
D [auth B] | IPR018303 | P-type ATPase, phosphorylation site | PTM |
D [auth B] | IPR036412 | HAD-like superfamily | Homologous Superfamily |
D [auth B] | IPR006391 | P-type ATPase, B chain, subfamily IA | Family |
D [auth B] | IPR023298 | P-type ATPase, transmembrane domain superfamily | Homologous Superfamily |
D [auth B] | IPR023299 | P-type ATPase, cytoplasmic domain N | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | P-type ATPase (P-ATPase) | KdpA ATPase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
D [auth B] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |