7Z9B | pdb_00007z9b

Sam68

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth CCC]	Ndufs5	e7z9bCCC1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ndufs5	ECOD (v295)
B [auth BBB]	Ndufs5	e7z9bBBB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ndufs5	ECOD (v295)
A [auth AAA]	Ndufs5	e7z9bAAA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ndufs5	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB], C [auth CCC]	PF22675	KHDC4/BBP-like, KH-domain type I (KH-I_KHDC4-BBP)	KHDC4/BBP-like, KH-domain type I	This entry represents eukaryotic type I KH domain. The core KH domain is accompanied by additional alpha-helix and beta-sheet motifs at the C terminus. This entry includes proteins involved in pre-mRNA splicing such as KH domain-containing BBP from f ...	This entry represents eukaryotic type I KH domain. The core KH domain is accompanied by additional alpha-helix and beta-sheet motifs at the C terminus. This entry includes proteins involved in pre-mRNA splicing such as KH domain-containing BBP from fungi, KH homology domain-containing protein 4 (KHDC4, also known as BLOM7) and splicing factor 1 (SF1) from animals, and homologues from plants, including RIK. KHDC4 interacts with the PRP19C/Prp19 complex/NTC/Nineteen complex which is part of the spliceosome. It binds preferentially RNA with A/C rich sequences and poly-C stretches. Branchpoint binding proteins (BBP) from fungi and its mammalian homologue SF1 are required for pre-spliceosome formation [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth BBB], C [auth CCC]	KH domain-containing, RNA-binding, signal transduction-associated protein 1	protein binding binding protein domain specific binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity molecular function inhibitor activity molecular function regulator activity SH2 domain binding RNA binding nucleic acid binding SH3 domain binding DNA binding mRNA binding protein binding binding protein domain specific binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity molecular function inhibitor activity molecular function regulator activity SH2 domain binding RNA binding nucleic acid binding SH3 domain binding DNA binding mRNA binding protein-containing complex binding poly(A) binding poly-purine tract binding single-stranded RNA binding poly-pyrimidine tract binding poly(U) RNA binding protein tyrosine kinase binding kinase binding enzyme binding protein kinase binding identical protein binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport positive regulation of nucleocytoplasmic transport nuclear transport positive regulation of biological process positive regulation of nucleobase-containing compound transport localization intercellular transport positive regulation of RNA export from nucleus establishment of localization in cell positive regulation of intracellular transport RNA localization nuclear export nucleobase-containing compound transport positive regulation of cellular process regulation of intracellular transport RNA transport regulation of transport regulation of nucleobase-containing compound transport regulation of RNA export from nucleus nucleic acid transport intracellular transport regulation of nucleocytoplasmic transport establishment of localization RNA export from nucleus establishment of RNA localization positive regulation of transport regulation of cellular localization macromolecule localization cellular response to stimulus immune response-regulating cell surface receptor signaling pathway response to stimulus signaling cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response alternative mRNA splicing, via spliceosome regulation of mRNA splicing, via spliceosome mRNA processing RNA processing regulation of mRNA processing RNA splicing regulation of RNA splicing mRNA metabolic process RNA splicing, via transesterification reactions regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile regulation of mRNA metabolic process regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death mitotic cell cycle process cell cycle phase transition cell cycle G1/S transition of mitotic cell cycle cell cycle G1/S phase transition mitotic cell cycle mitotic cell cycle phase transition cell cycle process regulation of cell cycle positive regulation of protein metabolic process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process translational initiation protein metabolic process regulation of translational initiation regulation of protein metabolic process translation positive regulation of gene expression regulation of translation positive regulation of translational initiation cell cycle G2/M phase transition G2/M transition of mitotic cell cycle	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex Grb2-Sos complex membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex Grb2-Sos complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth BBB], C [auth CCC]	IPR032571	KHDRBS, Qua1 domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC]	IPR032335	Sam68, tyrosine-rich domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC]	IPR004087	K Homology domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC]	IPR036612	K Homology domain, type 1 superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC]	IPR045071	KH domain-containing BBP-like	Family
A [auth AAA], B [auth BBB], C [auth CCC]	IPR055256	KHDC4/BBP-like, KH-domain type I	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.