7Z6L
Crystal structure of PROTAC 5 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Bromodomain | e7z6lA1 | A: alpha bundles | X: Bromodomain-like | H: Bromodomain (From Topology) | T: Bromodomain | F: Bromodomain | ECOD (1.6) |
B | VHL | e7z6lB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Prealbumin-like | F: VHL | ECOD (1.6) |
B | VHL_C | e7z6lB1 | A: alpha arrays | X: SOCS box-like (From Topology) | H: SOCS box-like (From Topology) | T: SOCS box-like | F: VHL_C | ECOD (1.6) |
C | Skp1_POZ_1 | e7z6lC1 | A: a+b two layers | X: POZ domain (From Topology) | H: POZ domain (From Topology) | T: POZ domain | F: Skp1_POZ_1 | ECOD (1.6) |
D | ubiquitin_2 | e7z6lD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00439 | Bromodomain (Bromodomain) | Bromodomain | Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3]. | Domain | |
PF17211 | VHL box domain (VHL_C) | VHL box domain | This domain represents the short C-terminal alpha helical domain from the VHL protein [1]. | Domain | |
PF01847 | VHL beta domain (VHL) | VHL beta domain | VHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA. | Domain | |
PF03931 | Skp1 family, tetramerisation domain (Skp1_POZ) | Skp1 family, tetramerisation domain | - | Domain | |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |