7Z5U
Crystal structure of the peptidase domain of collagenase G from Clostridium histolyticum in complex with a hydroxamate-based inhibitor
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF08378 | e7z5uA2 | A: a+b two layers | X: Alpha-beta plaits | H: Collagenase G catalytic helper subdomain (From Topology) | T: Collagenase G catalytic helper subdomain | F: EUF08378 | ECOD (1.6) |
A | Peptidase_M9 | e7z5uA1 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: Peptidase_M9 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18496 | Collagenase G catalytic helper subdomain (ColG_sub) | Collagenase G catalytic helper subdomain | This is the catalytic helper subdomain found in collagenase G from Clostridium histolyticum. This domain is indispensable for proper folding and full peptidase activity [1, 2]. | Domain | |
PF01752 | Collagenase (Peptidase_M9) | Collagenase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR022409 | PKD/Chitinase domain | Domain | |
IPR000601 | PKD domain | Domain | |
IPR013661 | Peptidase M9, collagenase, N-terminal domain | Domain | |
IPR035986 | PKD domain superfamily | Homologous Superfamily | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR041379 | Collagenase ColG-like, catalytic helper subdomain | Domain | |
IPR007280 | Peptidase, C-terminal, archaeal/bacterial | Domain | |
IPR002169 | Peptidase M9A/M9B, collagenase, bacterial | Family |