Annotations: 7Z27

Crystal structure of the SPOC domain of human RBM15

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	KRAB	e7z27B1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: KRAB	ECOD (v294.2)
A	KRAB	e7z27A1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: KRAB	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	RNA-binding protein 15	RNA binding binding nucleic acid binding mRNA binding	developmental process heart development multicellular organismal process cardiac chamber morphogenesis animal organ development heart morphogenesis ventricular septum development circulatory system development multicellular organism development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development anatomical structure development developmental process heart development multicellular organismal process cardiac chamber morphogenesis animal organ development heart morphogenesis ventricular septum development circulatory system development multicellular organism development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development anatomical structure development animal organ morphogenesis cardiac ventricle development system development regulation of cellular process alternative mRNA splicing, via spliceosome RNA metabolic process regulation of mRNA splicing, via spliceosome mRNA processing regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process regulation of RNA metabolic process RNA processing regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process regulation of mRNA processing RNA splicing regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression nucleobase-containing compound biosynthetic process regulation of RNA splicing mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process RNA splicing, via transesterification reactions regulation of alternative mRNA splicing, via spliceosome mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of mRNA metabolic process regulation of metabolic process macromolecule methylation RNA modification methylation macromolecule modification RNA methylation cellular response to stimulus response to stimulus positive regulation of macromolecule biosynthetic process cell communication positive regulation of metabolic process DNA-templated transcription transcription by RNA polymerase II positive regulation of macromolecule metabolic process signal transduction regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of transcription of Notch receptor target regulation of DNA-templated transcription signaling positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of biosynthetic process positive regulation of cellular process regulation of RNA biosynthetic process cell surface receptor signaling pathway Notch signaling pathway positive regulation of RNA biosynthetic process placenta blood vessel development placenta development vasculature development blood vessel development cellular developmental process regulation of developmental process regulation of megakaryocyte differentiation megakaryocyte differentiation cell development regulation of cell differentiation regulation of cell development cell differentiation regulation of immune system process regulation of multicellular organismal process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation myeloid cell differentiation immune system process regulation of hemopoiesis immune system development spleen development hematopoietic or lymphoid organ development branching morphogenesis of an epithelial tube angiogenesis tube morphogenesis epithelial tube morphogenesis epithelium development blood vessel morphogenesis tube development morphogenesis of an epithelium tissue development branching involved in blood vessel morphogenesis tissue morphogenesis morphogenesis of a branching structure anatomical structure formation involved in morphogenesis morphogenesis of a branching epithelium negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process heterochromatin formation sex-chromosome dosage compensation epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process dosage compensation by inactivation of X chromosome negative regulation of gene expression, epigenetic negative regulation of cell differentiation negative regulation of developmental process negative regulation of myeloid cell differentiation thrombopoietin-mediated signaling pathway response to cytokine response to chemokine cytokine-mediated signaling pathway cellular response to chemokine chemokine-mediated signaling pathway response to peptide response to chemical G protein-coupled receptor signaling pathway cellular response to cytokine stimulus	protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex RNA N6-methyladenosine methyltransferase complex methyltransferase complex transferase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck protein-containing complex intracellular anatomical structure cellular anatomical structure catalytic complex RNA N6-methyladenosine methyltransferase complex methyltransferase complex transferase complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule intracellular organelle nuclear body nucleoplasm organelle lumen organelle membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen nuclear membrane membrane endomembrane system organelle envelope nuclear envelope organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016194	SPOC-like, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR034473	RBM15, RNA recognition motif 3	Domain
A, B	IPR012921	Spen paralogue and orthologue SPOC, C-terminal	Domain
A, B	IPR010912	Spen paralogue/orthologue C-terminal, metazoa	Domain
A, B	IPR000504	RNA recognition motif domain	Domain
A, B	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A, B	IPR034470	RBM15, RNA recognition motif 1	Domain
A, B	IPR034472	RBM15, RNA recognition motif 2	Domain
A, B	IPR035979	RNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q96T37	breast cancer large cell medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia cancer lymphoplasmacytic lymphoma pancreatic intraductal papillary-mucinous carcinoma plasma cell myeloma dermatomyositis osteosarcoma pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7Z27 | pdb_00007z27

Crystal structure of the SPOC domain of human RBM15

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation