7Z1Z
MVV strand transfer complex (STC) intasome in complex with LEDGF/p75 at 3.5 A resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
N [auth I] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
P [auth K] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
Q [auth L] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
R [auth M] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
S [auth N] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
U [auth P] | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8072259 | 3000355 | SCOP2B (2022-06-29) |
I [auth R] | SCOP2B Superfamily | HIV integrase-binding domain | 8035439 | 3001321 | SCOP2B (2022-06-29) |
J [auth Q] | SCOP2B Superfamily | HIV integrase-binding domain | 8035439 | 3001321 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Integrase_Zn | e7z1zB2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
B | rve | e7z1zB1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
C | IN_DBD_C | e7z1zC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
C | Integrase_Zn | e7z1zC3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
C | rve | e7z1zC2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
D | IN_DBD_C | e7z1zD3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
D | Integrase_Zn | e7z1zD1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
D | rve | e7z1zD2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
E | IN_DBD_C | e7z1zE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
E | Integrase_Zn | e7z1zE3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
E | rve | e7z1zE2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G | Integrase_Zn | e7z1zG1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
G | rve | e7z1zG2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
H | IN_DBD_C | e7z1zH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
H | rve | e7z1zH2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
N [auth I] | IN_DBD_C | e7z1zI2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
N [auth I] | Integrase_Zn | e7z1zI3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
N [auth I] | rve | e7z1zI1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
O [auth J] | Integrase_Zn | e7z1zJ2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
O [auth J] | rve | e7z1zJ1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
P [auth K] | IN_DBD_C | e7z1zK3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
P [auth K] | Integrase_Zn | e7z1zK1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
P [auth K] | rve | e7z1zK2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
T [auth O] | Integrase_Zn | e7z1zO1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
T [auth O] | rve | e7z1zO2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
A | IN_DBD_C | e7z1zA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
A | Integrase_Zn | e7z1zA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
A | rve | e7z1zA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
F | IN_DBD_C | e7z1zF2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F | Integrase_Zn | e7z1zF1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
F | rve | e7z1zF3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Q [auth L] | IN_DBD_C | e7z1zL3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
Q [auth L] | Integrase_Zn | e7z1zL1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
Q [auth L] | rve | e7z1zL2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
R [auth M] | IN_DBD_C | e7z1zM2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
R [auth M] | Integrase_Zn | e7z1zM1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
R [auth M] | rve | e7z1zM3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
S [auth N] | IN_DBD_C | e7z1zN3 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
S [auth N] | Integrase_Zn | e7z1zN2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
S [auth N] | rve | e7z1zN1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
U [auth P] | IN_DBD_C | e7z1zP2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
U [auth P] | rve | e7z1zP1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
I [auth R] | LEDGF | e7z1zR1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
J [auth Q] | LEDGF | e7z1zQ1 | A: alpha bundles | X: N-cbl like | H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology) | T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | F: LEDGF | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain | |
PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain | |
I [auth R], J [auth Q] | PF11467 | Lens epithelium-derived growth factor (LEDGF) (LEDGF) | Lens epithelium-derived growth factor (LEDGF) | LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ... | Domain |