7XPL
Crystal structure of a C/D-free RNA-guided RNA 2'-O-methyltransferase
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth E] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8063660 | 3000118 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Nop_C | e7xplA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
A | Nop_N | e7xplA3 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
A | PRK14552 | e7xplA2 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
B | Nop_C | e7xplB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: Nop C-terminal domain | F: Nop_C | ECOD (1.6) |
B | Nop_N | e7xplB2 | A: alpha complex topology | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: Nop_N | ECOD (1.6) |
B | PRK14552 | e7xplB3 | A: mixed a+b and a/b | X: Nop N-terminal domain (From Topology) | H: Nop N-terminal domain (From Topology) | T: Nop N-terminal domain | F: PRK14552 | ECOD (1.6) |
C [auth E] | Fibrillarin | e7xplE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
D [auth F] | Fibrillarin | e7xplF1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Fibrillarin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21572 | Archaeal Nop5/56-rel, N-terminal domain (Nop5_56-rel_N_Arc) | Archaeal Nop5/56-rel, N-terminal domain | This domain is found at the N-terminal end of a group of archaeal proteins, including Uncharacterized NOP5 family protein MJ0694 from Methanocaldococcus jannaschii. This domain interacts with fibrillarin, the other subunit of a complex that is critic ... | Domain | |
PF01798 | snoRNA binding domain, fibrillarin (Nop) | snoRNA binding domain, fibrillarin | - | Family | |
C [auth E], D [auth F] | PF01269 | Fibrillarin (Fibrillarin) | Fibrillarin | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR042239 | Nop, C-terminal domain | Homologous Superfamily | |
IPR036070 | Nop domain superfamily | Homologous Superfamily | |
IPR045056 | Nucleolar protein Nop56/Nop58 | Family | |
IPR002687 | Nop domain | Domain | |
IPR048896 | Nop5/56-related, N-terminal domain | Domain | |
IPR012976 | NOSIC | Domain | |
IPR047099 | Nop5, N-terminal domain superfamily | Homologous Superfamily | |
C [auth E], D [auth F] | IPR000692 | rRNA 2'-O-methyltransferase fibrillarin-like | Family |
C [auth E], D [auth F] | IPR020813 | Fibrillarin, conserved site | Conserved Site |
C [auth E], D [auth F] | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily |