7X6L
Cryo-EM structure of H3 hemagglutinin from A/HongKong/01/1968 in complex with a neutralizing antibody 28-12
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8094281 | 3001342 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8094281 | 3001342 | SCOP2B (2022-06-29) |
K [auth D] | SCOP2B Superfamily | Influenza hemagglutinin domain-like | 8094281 | 3001342 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088048 | 3001616 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2 Family | Influenza hemagglutinin (stalk) | 8106875 | 4003840 | SCOP2 (2022-06-29) |
H [auth E] | SCOP2 Superfamily | Influenza hemagglutinin (stalk) | 8106876 | 3001616 | SCOP2 (2022-06-29) |
H [auth E] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088048 | 3001616 | SCOP2B (2022-06-29) |
L [auth F] | SCOP2B Superfamily | Influenza hemagglutinin (stalk) | 8088048 | 3001616 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I] | C1-set_1 | e7x6lI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
A [auth I] | V-set_12 | e7x6lI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
E [auth G] | C1-set_1 | e7x6lG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth G] | V-set_12 | e7x6lG2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
I [auth H] | C1-set_1 | e7x6lH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
I [auth H] | V-set_12 | e7x6lH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
B [auth K] | C1-set_4 | e7x6lK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth K] | V-set | e7x6lK2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth J] | C1-set_4 | e7x6lJ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
F [auth J] | V-set | e7x6lJ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
J [auth L] | C1-set_4 | e7x6lL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
J [auth L] | V-set | e7x6lL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth A] | Hemagglutinin_1st | e7x6lA1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
G [auth C] | Hemagglutinin_1st | e7x6lC1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
K [auth D] | Hemagglutinin_1st | e7x6lD1 | A: beta sandwiches | X: jelly-roll | H: Viral protein domain (From Topology) | T: Viral protein domain | F: Hemagglutinin_1st | ECOD (1.6) |
D [auth B] | Hemagglutinin_2nd | e7x6lB1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
H [auth E] | Hemagglutinin_2nd | e7x6lE1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
L [auth F] | Hemagglutinin_2nd | e7x6lF1 | A: alpha bundles | X: Hemagglutinin HA2 chain (From Topology) | H: Hemagglutinin HA2 chain (From Topology) | T: Hemagglutinin HA2 chain | F: Hemagglutinin_2nd | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth I], E [auth G], I [auth H] | Heavy Chain | IGHV3 | - | hemagglutinin | hemagglutinin | SAbDab (2024-10-04) |
B [auth K], F [auth J], J [auth L] | Light Chain | IGKV1 | Kappa | hemagglutinin | hemagglutinin | SAbDab (2024-10-04) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A], G [auth C], K [auth D] | PF00509 | Haemagglutinin (Hemagglutinin) | Haemagglutinin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A], G [auth C], K [auth D] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
C [auth A], G [auth C], K [auth D] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
C [auth A], G [auth C], K [auth D] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
C [auth A], G [auth C], K [auth D] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |
D [auth B], H [auth E], L [auth F] | IPR001364 | Haemagglutinin, influenzavirus A/B | Family |
D [auth B], H [auth E], L [auth F] | IPR008980 | Viral capsid/haemagglutinin protein | Homologous Superfamily |
D [auth B], H [auth E], L [auth F] | IPR000149 | Haemagglutinin, influenzavirus A | Family |
D [auth B], H [auth E], L [auth F] | IPR013828 | Haemagglutinin, HA1 chain, alpha/beta domain superfamily | Homologous Superfamily |