7WOO

Cryo-EM structure of the inner ring protomer of the Saccharomyces cerevisiae nuclear pore complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Scaffolding nucleoporins	8090311	3002255	SCOP2B (2022-06-29)
L [auth Z]	SCOP2B Superfamily	Scaffolding nucleoporins	8090311	3002255	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Scaffolding nucleoporins	8090960	3002255	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090971	3000456	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Scaffolding nucleoporins	8090959	3002255	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth C]	Nucleoporin_N	e7wooC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
B [auth C]	Nucleoporin_C_C	e7wooC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
B [auth C]	Nucleoporin_C_N	e7wooC3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_N	ECOD (1.6)
C [auth D]	Nucleoporin_N	e7wooD2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: Nucleoporin_N	ECOD (1.6)
C [auth D]	Nucleoporin_C_C	e7wooD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_C	ECOD (1.6)
C [auth D]	Nucleoporin_C_N	e7wooD3	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: Nucleoporin_C_N	ECOD (1.6)
E [auth F]	Nup192_1st	e7wooF1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_1st	ECOD (1.6)
E [auth F]	Nup192_2nd	e7wooF2	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: Nup192_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, L [auth Z]	PF04097	Nup93/Nic96 (Nic96)	Nup93/Nic96	-	Repeat
B [auth C]	PF03177	Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)	Non-repetitive/WGA-negative nucleoporin C-terminal	-	Repeat
B [auth C]	PF08801	Nup133 N terminal like (Nucleoporin_N)	Nup133 N terminal like	-	Repeat
C [auth D]	PF03177	Non-repetitive/WGA-negative nucleoporin C-terminal (Nucleoporin_C)	Non-repetitive/WGA-negative nucleoporin C-terminal	-	Repeat
C [auth D]	PF08801	Nup133 N terminal like (Nucleoporin_N)	Nup133 N terminal like	-	Repeat
D [auth E]	PF10487	Nucleoporin Nup188, N-terminal (Nup188_N)	Nucleoporin Nup188, N-terminal	-	Repeat
D [auth E]	PF18378	Nuclear pore protein NUP188 C-terminal domain (Nup188_C)	Nuclear pore protein NUP188 C-terminal domain	-	Repeat
D [auth E]	PF21093	Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III)	Nucleoporin Nup188, N-terminal subdomain III	-	Repeat
E [auth F]	PF11894	Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)	Nuclear pore complex scaffold, nucleoporins 186/192/205	-	Repeat
G [auth H], J [auth K]	PF13874	Nucleoporin complex subunit 54 (Nup54)	Nucleoporin complex subunit 54	This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ...	This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar, whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, L [auth Z]	Nucleoporin NIC96	structural molecule activity structural constituent of nuclear pore	cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport establishment of localization nitrogen compound transport cellular biosynthetic process mRNA transport mRNA export from nucleus RNA localization nuclear export nucleobase-containing compound transport RNA transport cellular metabolic process nucleic acid transport poly(A)+ mRNA export from nucleus gene expression macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization metabolic process macromolecule metabolic process establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus ribosomal large subunit export from nucleus protein-containing complex localization cellular component biogenesis ribosome biogenesis organelle localization ribosome localization protein localization establishment of protein localization protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization protein localization to organelle protein import into nucleus intracellular protein transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane nuclear pore linkers nuclear pore nuclear basket
B [auth C]	Nucleoporin NUP157	DNA binding binding organic cyclic compound binding nucleic acid binding RNA binding structural molecule activity structural constituent of nuclear pore	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular component organization organelle organization chromosome organization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery cellular localization nucleocytoplasmic transport nuclear transport establishment of localization in cell intracellular transport protein localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope protein localization to organelle cellular macromolecule localization protein localization to nuclear inner membrane post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery nuclear pore organization protein-containing complex organization pore complex assembly cellular component biogenesis nuclear pore complex assembly nucleus organization cellular component assembly protein-containing complex assembly establishment of protein localization import into nucleus establishment of protein localization to organelle protein transport protein import into nucleus intracellular protein transport RNA export from nucleus nuclear export	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring protein-containing complex nuclear protein-containing complex nuclear pore
C [auth D]	Nucleoporin NUP170	protein-containing complex binding binding chromatin binding structural molecule activity structural constituent of nuclear pore promoter-specific chromatin binding	localization telomere localization telomere tethering at nuclear periphery chromosome localization organelle localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization establishment of RNA localization macromolecule localization RNA localization localization telomere localization telomere tethering at nuclear periphery chromosome localization organelle localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport cellular component organization organelle organization chromosome organization cellular process cellular component organization or biogenesis transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery regulation of cellular process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process chromatin organization negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression cellular metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process cell cycle chromosome segregation cell cycle process cellular localization nucleocytoplasmic transport nuclear transport establishment of localization in cell intracellular transport protein localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope protein localization to organelle cellular macromolecule localization protein localization to nuclear inner membrane nuclear pore organization protein-containing complex organization pore complex assembly cellular component biogenesis nuclear pore complex assembly nucleus organization cellular component assembly protein-containing complex assembly establishment of protein localization import into nucleus establishment of protein localization to organelle protein transport protein import into nucleus intracellular protein transport RNA export from nucleus nuclear export	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring protein-containing complex nuclear protein-containing complex nuclear pore chromosome, subtelomeric region intracellular non-membrane-bounded organelle chromosome chromosome, telomeric region chromosomal region non-membrane-bounded organelle
D [auth E]	Nucleoporin NUP188	structural molecule activity structural constituent of nuclear pore	cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport establishment of localization protein localization establishment of protein localization nitrogen compound transport protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle protein import into nucleus intracellular protein transport cellular response to stimulus response to stimulus cellular biosynthetic process response to heat mRNA transport response to temperature stimulus cellular response to stress mRNA export from nucleus response to stress RNA localization nuclear export nucleobase-containing compound transport response to organic cyclic compound cellular response to heat RNA transport cellular metabolic process nucleic acid transport response to nitrogen compound gene expression macromolecule biosynthetic process RNA export from nucleus mRNA export from nucleus in response to heat stress establishment of RNA localization biosynthetic process response to chemical metabolic process response to abiotic stimulus macromolecule metabolic process	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane nuclear pore inner ring protein-containing complex nuclear protein-containing complex nuclear pore
E [auth F]	Nucleoporin NUP192	structural molecule activity structural constituent of nuclear pore	cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport establishment of localization regulation of localization regulation of biological process regulation of cellular process regulation of transport biological regulation regulation of nucleocytoplasmic transport regulation of cellular localization regulation of intracellular transport RNA transport nitrogen compound transport nucleic acid transport mRNA transport establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization protein transport cellular macromolecule localization	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear pore inner ring
F [auth G], I [auth J]	Nucleoporin NUP49/NSP49	molecular condensate scaffold activity protein-macromolecule adaptor activity molecular adaptor activity RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of nuclear pore identical protein binding protein binding nuclear localization sequence binding signal sequence binding peptide binding	localization telomere localization telomere tethering at nuclear periphery chromosome localization organelle localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport mRNA export from nucleus establishment of localization in cell localization telomere localization telomere tethering at nuclear periphery chromosome localization organelle localization cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport cellular metabolic process nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process tRNA export from nucleus tRNA transport cellular component organization primary metabolic process protein metabolic process cellular component organization or biogenesis supramolecular fiber organization amyloid fibril formation organelle organization chromosome organization transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus ribosomal large subunit export from nucleus protein-containing complex localization cellular component biogenesis ribosome biogenesis ribosome localization protein localization establishment of protein localization protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization protein localization to organelle protein import into nucleus intracellular protein transport	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex nuclear protein-containing complex nuclear pore nuclear pore central transport channel nuclear pore cytoplasmic filaments
G [auth H], J [auth K]	Nucleoporin NUP57	structural molecule activity structural constituent of nuclear pore identical protein binding protein binding binding	cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis protein localization establishment of protein localization cellular localization NLS-bearing protein import into nucleus nitrogen compound transport nucleocytoplasmic transport transport cellular component organization nucleus organization organelle organization nuclear pore organization protein-containing complex organization cellular process cellular component organization or biogenesis protein localization establishment of protein localization cellular localization NLS-bearing protein import into nucleus nitrogen compound transport nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle establishment of localization in cell protein import into nucleus intracellular protein transport RNA transport nucleic acid transport mRNA transport establishment of RNA localization RNA localization nucleobase-containing compound transport localization within membrane protein localization to membrane protein localization to nuclear envelope protein localization to nuclear inner membrane	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex nuclear protein-containing complex nuclear pore nuclear pore central transport channel
H [auth I], K [auth L]	Nucleoporin NSP1	binding phospholipid binding lipid binding structural molecule activity structural constituent of nuclear pore	cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport cellular localization nitrogen compound transport nucleocytoplasmic transport transport cellular biosynthetic process nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport cellular metabolic process nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process protein localization establishment of protein localization NLS-bearing protein import into nucleus protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport cellular macromolecule localization protein localization to organelle protein import into nucleus intracellular protein transport tRNA export from nucleus tRNA transport establishment of organelle localization ribonucleoprotein complex biogenesis ribosomal subunit export from nucleus protein-containing complex localization cellular component biogenesis ribosome biogenesis ribosomal small subunit export from nucleus organelle localization cellular component organization or biogenesis ribosome localization ribosomal large subunit export from nucleus	membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system nuclear membrane membrane organelle membrane protein-containing complex nuclear protein-containing complex nuclear pore nuclear pore central transport channel membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen nuclear pore nuclear basket

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, L [auth Z]	IPR007231	Nucleoporin interacting component Nup93/Nic96	Family
B [auth C]	IPR042537	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Homologous Superfamily
B [auth C]	IPR042533	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Homologous Superfamily
B [auth C]	IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	Domain
B [auth C]	IPR004870	Nucleoporin, Nup155-like	Family
B [auth C]	IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	Domain
C [auth D]	IPR042537	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Homologous Superfamily
C [auth D]	IPR042533	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Homologous Superfamily
C [auth D]	IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	Domain
C [auth D]	IPR004870	Nucleoporin, Nup155-like	Family
C [auth D]	IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	Domain
D [auth E]	IPR044840	Nucleoporin Nup188	Family
D [auth E]	IPR041634	Nuclear pore protein Nup188, C-terminal	Domain
D [auth E]	IPR048883	Nucleoporin Nup188, N-terminal subdomain III	Domain
D [auth E]	IPR018864	Nucleoporin Nup188, N-terminal	Domain
E [auth F]	IPR021827	Nucleoporin Nup186/Nup192/Nup205	Family
F [auth G], I [auth J]	IPR024882	Nucleoporin p58/p45/NUP49	Family
F [auth G], I [auth J]	IPR025574	Nucleoporin FG repeat	Repeat
G [auth H], J [auth K]	IPR025574	Nucleoporin FG repeat	Repeat
G [auth H], J [auth K]	IPR024864	Nucleoporin Nup54/Nup57/Nup44	Family
G [auth H], J [auth K]	IPR025712	Nucleoporin Nup54, alpha-helical domain	Domain
H [auth I], K [auth L]	IPR007758	Nucleoporin, NSP1-like, C-terminal	Domain
H [auth I], K [auth L]	IPR026010	Nucleoporin NSP1/NUP62	Family