7VWX | pdb_00007vwx

CryoEM structure of football-shaped GroEL:ES2 with RuBisCO


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth X]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
Y [auth W]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
X [auth V]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
W [auth U]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
V [auth T]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
U [auth S]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
B [auth 2]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
A [auth 1]SCOP2B SuperfamilyGroES-like 8002348 3000002 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
O [auth M]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
N [auth L]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
K [auth I]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
J [auth H]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
E [auth C]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyGroEL apical domain-like 8043929 3000963 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyGroEL-intermediate domain like 8032390 3001087 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyGroEL equatorial domain-like 8032389 3001651 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth X]Sybindine7vwxX1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
Y [auth W]Sybindine7vwxW1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
X [auth V]Sybindine7vwxV1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
W [auth U]Sybindine7vwxU1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
V [auth T]Sybindine7vwxT1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
U [auth S]Sybindine7vwxS1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
T [auth R]Sybindine7vwxR1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
S [auth Q]Sybindine7vwxQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
R [auth P]Sybindine7vwxP1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
Q [auth O]Sybindine7vwxO1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
BA [auth Z]Sybindine7vwxZ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
B [auth 2]Sybindine7vwx21 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
AA [auth Y]Sybindine7vwxY1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
A [auth 1]Peptidase_S28e7vwx11 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_S28ECOD (v294.1)
P [auth N]Sybindine7vwxN1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
O [auth M]Sybindine7vwxM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
N [auth L]Sybindine7vwxL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
M [auth K]Sybindine7vwxK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
L [auth J]Sybindine7vwxJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
K [auth I]Sybindine7vwxI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
J [auth H]Sybindine7vwxH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
I [auth G]Sybindine7vwxG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
H [auth F]Sybindine7vwxF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
G [auth E]Sybindine7vwxE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
F [auth D]Sybindine7vwxD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
E [auth C]Sybindine7vwxC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
D [auth B]Sybindine7vwxB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SybindinECOD (v294.1)
C [auth A]Peptidase_S28e7vwxA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_S28ECOD (v294.1)
CA [auth a]Peptidase_S28e7vwxa1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_S28ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00166Chaperonin 10 Kd subunit (Cpn10)Chaperonin 10 Kd subunitThis family contains GroES and Gp31-like chaperonins. Gp31 is a functional co-chaperonin that is required for the folding and assembly of Gp23, a major capsid protein, during phage morphogenesis [1]. Domain
PF00118TCP-1/cpn60 chaperonin family (Cpn60_TCP1)TCP-1/cpn60 chaperonin family- Family
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold. Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Co-chaperonin GroES
Chaperonin GroEL
CA [auth a]Ribulose bisphosphate carboxylase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR018369Chaperonin GroES, conserved siteConserved Site
IPR011032GroES-like superfamilyHomologous Superfamily
IPR037124GroES chaperonin superfamilyHomologous Superfamily
IPR020818GroES chaperonin familyFamily
IPR027413GroEL-like equatorial domain superfamilyHomologous Superfamily
IPR027410TCP-1-like chaperonin intermediate domain superfamilyHomologous Superfamily
IPR001844Chaperonin Cpn60/GroELFamily
IPR018370Chaperonin Cpn60, conserved siteConserved Site
IPR027409GroEL-like apical domain superfamilyHomologous Superfamily
IPR002423Chaperonin Cpn60/GroEL/TCP-1 familyFamily
CA [auth a]IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
CA [auth a]IPR020871Ribulose bisphosphate carboxylase large subunit, type IIFamily
CA [auth a]IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
CA [auth a]IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
CA [auth a]IPR033966RuBisCOFamily
CA [auth a]IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
CA [auth a]IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain