7VPH
Crystal structure of the C-terminal tail of SARS-CoV-2 Orf6 complex with human nucleoporin pair Rae1-Nup98
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ANAPC4_WD40_4 | e7vphA1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
G | ANAPC4_WD40_4 | e7vphG1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
C | ANAPC4_WD40_4 | e7vphC1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
E | ANAPC4_WD40_4 | e7vphE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_4 | ECOD (1.6) |
D | KOG0845 | e7vphD1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
B | KOG0845 | e7vphB1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
F | KOG0845 | e7vphF1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
H | KOG0845 | e7vphH1 | A: extended segments | X: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | H: Gle2-binding sequence (GLEBS) of Nup98 (From Topology) | T: Gle2-binding sequence (GLEBS) of Nup98 | F: KOG0845 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
PF21240 | Nup98, Gle2-binding sequence (Nup98_GLEBS) | Nup98, Gle2-binding sequence | This is the Gle2-binding sequence (GLEBS) of Nup98, which forms a hairpin that binds with its C-terminal arm to an essentially invariant hydrophobic surface that extends over the top face of the Rae1 beta-propeller [1]. This interaction is required f ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR001680 | WD40 repeat | Repeat | |
IPR020472 | G-protein beta WD-40 repeat | Repeat | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR037665 | Nucleoporin peptidase S59-like | Family | |
IPR036903 | Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain superfamily | Homologous Superfamily | |
IPR007230 | Nuclear pore complex protein Nup98-Nup96-like, autopeptidase S59 domain | Domain | |
IPR021967 | Nuclear pore complex protein NUP96, C-terminal domain | Domain | |
I, J, K, L [auth X] | IPR022736 | Non-structural protein NS6, betacoronavirus | Family |