7VFH

Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pox_Rif_1st	e7vfhA2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
A	Pox_Rif_3rd	e7vfhA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
A	Pox_Rif_2nd	e7vfhA3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
B	Pox_Rif_1st	e7vfhB3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
B	Pox_Rif_3rd	e7vfhB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
B	Pox_Rif_2nd	e7vfhB1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
C	Pox_Rif_1st	e7vfhC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
C	Pox_Rif_3rd	e7vfhC3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
C	Pox_Rif_2nd	e7vfhC2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
D	Pox_Rif_1st	e7vfhD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
D	Pox_Rif_3rd	e7vfhD3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
D	Pox_Rif_2nd	e7vfhD1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
E	Pox_Rif_1st	e7vfhE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
E	Pox_Rif_3rd	e7vfhE2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
E	Pox_Rif_2nd	e7vfhE3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
F	Pox_Rif_1st	e7vfhF3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
F	Pox_Rif_3rd	e7vfhF2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
F	Pox_Rif_2nd	e7vfhF1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
G	Pox_Rif_1st	e7vfhG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
G	Pox_Rif_3rd	e7vfhG3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
G	Pox_Rif_2nd	e7vfhG2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
H	Pox_Rif_1st	e7vfhH3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
H	Pox_Rif_3rd	e7vfhH2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
H	Pox_Rif_2nd	e7vfhH1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
I	Pox_Rif_1st	e7vfhI1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
I	Pox_Rif_3rd	e7vfhI2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
I	Pox_Rif_2nd	e7vfhI3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
J [auth L]	Pox_Rif_1st	e7vfhL2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
J [auth L]	Pox_Rif_3rd	e7vfhL3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
J [auth L]	Pox_Rif_2nd	e7vfhL1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
K [auth J]	Pox_Rif_1st	e7vfhJ2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
K [auth J]	Pox_Rif_3rd	e7vfhJ3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
K [auth J]	Pox_Rif_2nd	e7vfhJ1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
L [auth K]	Pox_Rif_1st	e7vfhK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
L [auth K]	Pox_Rif_3rd	e7vfhK2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
L [auth K]	Pox_Rif_2nd	e7vfhK3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
M [auth N]	Pox_Rif_1st	e7vfhN2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
M [auth N]	Pox_Rif_3rd	e7vfhN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
M [auth N]	Pox_Rif_2nd	e7vfhN3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
N [auth O]	Pox_Rif_1st	e7vfhO2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
N [auth O]	Pox_Rif_3rd	e7vfhO3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
N [auth O]	Pox_Rif_2nd	e7vfhO1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
O [auth M]	Pox_Rif_1st	e7vfhM3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
O [auth M]	Pox_Rif_3rd	e7vfhM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
O [auth M]	Pox_Rif_2nd	e7vfhM2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
P [auth Q]	Pox_Rif_1st	e7vfhQ3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
P [auth Q]	Pox_Rif_3rd	e7vfhQ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
P [auth Q]	Pox_Rif_2nd	e7vfhQ2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
Q [auth R]	Pox_Rif_1st	e7vfhR1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
Q [auth R]	Pox_Rif_3rd	e7vfhR3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
Q [auth R]	Pox_Rif_2nd	e7vfhR2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
R [auth P]	Pox_Rif_1st	e7vfhP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
R [auth P]	Pox_Rif_3rd	e7vfhP2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
R [auth P]	Pox_Rif_2nd	e7vfhP3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	PF03340	Poxvirus rifampicin resistance protein (Pox_Rif)	Poxvirus rifampicin resistance protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	Scaffold protein D13	identical protein binding protein binding binding	response to stimulus response to chemical response to antibiotic	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L], K [auth J], L [auth K], M [auth N], N [auth O], O [auth M], P [auth Q], Q [auth R], R [auth P]	IPR005008	Poxvirus rifampicin-resistance	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

Prepare Data

Validate Data

Deposit Data

Help and Resources

7VFH

Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage