7VFG

Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth D]	Pox_Rif_1st	e7vfgD2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
C [auth D]	Pox_Rif_3rd	e7vfgD3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
C [auth D]	Pox_Rif_2nd	e7vfgD1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
D [auth C]	Pox_Rif_1st	e7vfgC3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
D [auth C]	Pox_Rif_3rd	e7vfgC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
D [auth C]	Pox_Rif_2nd	e7vfgC2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
F [auth B]	Pox_Rif_1st	e7vfgB3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
F [auth B]	Pox_Rif_3rd	e7vfgB2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
F [auth B]	Pox_Rif_2nd	e7vfgB1	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
A [auth E]	Pox_Rif_1st	e7vfgE3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
A [auth E]	Pox_Rif_3rd	e7vfgE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
A [auth E]	Pox_Rif_2nd	e7vfgE2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
B [auth F]	Pox_Rif_1st	e7vfgF2	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
B [auth F]	Pox_Rif_3rd	e7vfgF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
B [auth F]	Pox_Rif_2nd	e7vfgF3	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)
E [auth A]	Pox_Rif_1st	e7vfgA3	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_1st	ECOD (1.6)
E [auth A]	Pox_Rif_3rd	e7vfgA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Pox_Rif_3rd	ECOD (1.6)
E [auth A]	Pox_Rif_2nd	e7vfgA2	A: a+b complex topology	X: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	H: Insertion domain in vaccinia virus scaffolding protein D13 (From Topology)	T: Insertion domain in vaccinia virus scaffolding protein D13	F: Pox_Rif_2nd	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth F], C [auth D], D [auth C], E [auth A], A [auth E], B [auth F], C [auth D], D [auth C], E [auth A], F [auth B]	Scaffold protein D13	identical protein binding protein binding binding	response to stimulus response to chemical response to antibiotic	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth F], C [auth D], D [auth C], E [auth A], A [auth E], B [auth F], C [auth D], D [auth C], E [auth A], F [auth B]	IPR005008	Poxvirus rifampicin-resistance	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.