7V3V
Cryo-EM structure of MCM double hexamer bound with DDK in State I
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 2] | PF17207 | e7v3v24 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
A [auth 2] | PF17855 | e7v3v23 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
A [auth 2] | PF14551 | e7v3v21 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
A [auth 2] | PF00493 | e7v3v22 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
A [auth 2] | F_UNCLASSIFIED | e7v3v25 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth B] | PF17207 | e7v3vB4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
G [auth B] | PF17855 | e7v3vB2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
G [auth B] | PF14551 | e7v3vB1 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
G [auth B] | PF00493 | e7v3vB5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
G [auth B] | F_UNCLASSIFIED | e7v3vB3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth 3] | PF17207 | e7v3v33 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
B [auth 3] | PF17855 | e7v3v35 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
B [auth 3] | PF14551 | e7v3v32 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
B [auth 3] | PF00493 | e7v3v34 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
B [auth 3] | F_UNCLASSIFIED | e7v3v31 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth C] | PF17207 | e7v3vC2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
H [auth C] | PF17855 | e7v3vC5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
H [auth C] | PF14551 | e7v3vC1 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
H [auth C] | PF00493 | e7v3vC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
H [auth C] | F_UNCLASSIFIED | e7v3vC4 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth 4] | PF17207 | e7v3v43 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
C [auth 4] | PF17855 | e7v3v42 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
C [auth 4] | PF14551 | e7v3v45 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
C [auth 4] | PF00493 | e7v3v41 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
C [auth 4] | PF17207 | e7v3v44 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
I [auth D] | PF17207 | e7v3vD3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
I [auth D] | PF17855 | e7v3vD4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
I [auth D] | PF14551 | e7v3vD1 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
I [auth D] | PF00493 | e7v3vD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
I [auth D] | PF17207 | e7v3vD5 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
D [auth 5] | PF17207 | e7v3v54 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
D [auth 5] | PF17855 | e7v3v53 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
D [auth 5] | PF14551 | e7v3v51 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
D [auth 5] | PF00493 | e7v3v52 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
D [auth 5] | F_UNCLASSIFIED | e7v3v55 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth E] | PF17207 | e7v3vE4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
J [auth E] | PF17855 | e7v3vE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
J [auth E] | PF14551 | e7v3vE2 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
J [auth E] | PF00493 | e7v3vE3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
J [auth E] | F_UNCLASSIFIED | e7v3vE5 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth 6] | PF17207 | e7v3v63 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
E [auth 6] | PF17855 | e7v3v61 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
E [auth 6] | PF14551 | e7v3v62 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
E [auth 6] | PF00493 | e7v3v64 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
E [auth 6] | PF17207 | e7v3v65 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
K [auth F] | PF17207 | e7v3vF4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
K [auth F] | PF17855 | e7v3vF2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
K [auth F] | PF14551 | e7v3vF5 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
K [auth F] | PF00493 | e7v3vF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
K [auth F] | PF17207 | e7v3vF3 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF17207 | ECOD (1.6) |
L [auth G] | PF17207 | e7v3vG4 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
L [auth G] | PF17855 | e7v3vG3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
L [auth G] | PF14551 | e7v3vG2 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
L [auth G] | PF00493 | e7v3vG5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
L [auth G] | F_UNCLASSIFIED | e7v3vG1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth 7] | PF17207 | e7v3v71 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF17207 | ECOD (1.6) |
F [auth 7] | PF17855 | e7v3v72 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17855 | ECOD (1.6) |
F [auth 7] | PF14551 | e7v3v73 | A: a+b complex topology | X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | H: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) (From Topology) | T: N-terminal subdomain in DNA replication initiator (cdc21/cdc54) | F: PF14551 | ECOD (1.6) |
F [auth 7] | PF00493 | e7v3v74 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00493 | ECOD (1.6) |
F [auth 7] | F_UNCLASSIFIED | e7v3v75 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth H] | PF00069 | e7v3vH1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: PF00069 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 2], G [auth B] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
A [auth 2], G [auth B] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
A [auth 2], G [auth B] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
A [auth 2], G [auth B] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
B [auth 3], H [auth C] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
B [auth 3], H [auth C] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
B [auth 3], H [auth C] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
B [auth 3], H [auth C] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
C [auth 4], I [auth D] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
C [auth 4], I [auth D] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
C [auth 4], I [auth D] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
C [auth 4], I [auth D] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
D [auth 5], J [auth E] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
D [auth 5], J [auth E] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
D [auth 5], J [auth E] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
D [auth 5], J [auth E] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
E [auth 6], K [auth F] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
E [auth 6], K [auth F] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
E [auth 6], K [auth F] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
E [auth 6], K [auth F] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
F [auth 7], L [auth G] | PF00493 | MCM P-loop domain (MCM) | MCM P-loop domain | - | Domain |
F [auth 7], L [auth G] | PF14551 | MCM N-terminal domain (MCM_N) | MCM N-terminal domain | This family contains the N-terminal domain of MCM proteins. | Domain |
F [auth 7], L [auth G] | PF17855 | MCM AAA-lid domain (MCM_lid) | MCM AAA-lid domain | This entry represents the AAA-lid domain found in MCM proteins. | Domain |
F [auth 7], L [auth G] | PF17207 | MCM OB domain (MCM_OB) | MCM OB domain | This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. | Domain |
M [auth H] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
N [auth I] | PF08630 | Dfp1/Him1, central region (Dfp1_Him1_M) | Dfp1/Him1, central region | - | Family |
N [auth I] | PF22437 | BRCT domain (DBF4_BRCT) | BRCT domain | This entry represents the BRCT domain found in Dbf4 protein. Dbf4 is a conserved eukaryotic protein that functions as the regulatory subunit of the Dbf4-dependent kinase (DDK) complex. DDK plays essential roles in DNA replication initiation and check ... | Domain |