7V2V
Crystal Structure of VpsR display novel dimeric architecture and c-di-GMP binding: mechanistic implications in oligomerization, ATPase activity and DNA binding.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | AtoC | e7v2vA2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
A | Sigma54_activat | e7v2vA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
A | F_UNCLASSIFIED | e7v2vA3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth D] | AtoC | e7v2vD2 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: AtoC | ECOD (1.6) |
B [auth D] | Sigma54_activat | e7v2vD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
B [auth D] | F_UNCLASSIFIED | e7v2vD3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth D] | PF00158 | Sigma-54 interaction domain (Sigma54_activat) | Sigma-54 interaction domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth D] | IPR009057 | Homedomain-like superfamily | Homologous Superfamily |
A, B [auth D] | IPR011006 | CheY-like superfamily | Homologous Superfamily |
A, B [auth D] | IPR002197 | DNA binding HTH domain, Fis-type | Domain |
A, B [auth D] | IPR002078 | RNA polymerase sigma factor 54 interaction domain | Domain |
A, B [auth D] | IPR025662 | Sigma-54 interaction domain, ATP-binding site 1 | Binding Site |
A, B [auth D] | IPR025944 | Sigma-54 interaction domain, conserved site | Conserved Site |
A, B [auth D] | IPR045343 | VpsR domain | Domain |
A, B [auth D] | IPR003593 | AAA+ ATPase domain | Domain |
A, B [auth D] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |