Annotations: 7UWS

Atomic model of the partial VSV nucleocapsid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8041903	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Gp23	e7uwsA1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
G	Gp23	e7uwsG1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
F	Gp23	e7uwsF1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
E	Gp23	e7uwsE1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
D	Gp23	e7uwsD1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
C	Complex1_51K	e7uwsC1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Complex1_51K	ECOD (v294.2)
B	Complex1_51K	e7uwsB1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Complex1_51K	ECOD (v294.2)
I [auth J]	Gp23	e7uwsJ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
J [auth K]	Gp23	e7uwsK1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
L [auth M]	Complex1_51K	e7uwsM1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Complex1_51K	ECOD (v294.2)
M [auth N]	Gp23	e7uwsN1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
N [auth O]	Gp23	e7uwsO1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
O [auth P]	Gp23	e7uwsP1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
P [auth Q]	Gp23	e7uwsQ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
Q [auth R]	Gp23	e7uwsR1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
S [auth T]	Gp23	e7uwsT1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
T [auth U]	Gp23	e7uwsU1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
R [auth S]	Gp23	e7uwsS1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)
K [auth L]	Gp23	e7uwsL1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
A	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)
G	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
F	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
F	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)
E	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
E	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)
D	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
C	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
C	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)
B	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (utative)
B	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G	PF00945	Rhabdovirus nucleocapsid protein (Rhabdo_ncap)	Rhabdovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G	Nucleoprotein	RNA binding binding nucleic acid binding	viral gene expression viral process viral transcription nucleobase-containing compound metabolic process RNA replication RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid
I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U]	Matrix protein	structural constituent of virion structural molecule activity	virion assembly viral process viral budding viral budding via host ESCRT complex viral life cycle	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host cell endomembrane system host intracellular region host cell nuclear envelope host intracellular membrane-bounded organelle host cellular component host intracellular part host cell nuclear membrane host cell membrane host cell nucleus other organism part host cell nuclear part host intracellular organelle cellular anatomical structure host cell part host cell endomembrane system host intracellular region host cell nuclear envelope virion component viral membrane viral envelope host cell cytoplasm
H	RNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR000448	Rhabdovirus nucleocapsid	Domain
A, B, C, D, E A, B, C, D, E, F, G	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily
I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U]	IPR009397	Vesiculovirus matrix	Family
I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U]	IPR036711	VSV matrix superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.