7UOJ
The CryoEM structure of N49-P9.6-FR3 and PGT121 Fabs in complex with BG505 SOSIP.664
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G [auth A] | F_UNCLASSIFIED | e7uojA2 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth A] | F_UNCLASSIFIED | e7uojA1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
G [auth A] | F_UNCLASSIFIED | e7uojA3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth I] | F_UNCLASSIFIED | e7uojI1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth I] | F_UNCLASSIFIED | e7uojI2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth I] | F_UNCLASSIFIED | e7uojI3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth G] | F_UNCLASSIFIED | e7uojG1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth G] | F_UNCLASSIFIED | e7uojG2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: F_UNCLASSIFIED | ECOD (1.6) |
A [auth G] | F_UNCLASSIFIED | e7uojG3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e7uojB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
N [auth J] | F_UNCLASSIFIED | e7uojJ1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth C] | F_UNCLASSIFIED | e7uojC1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth D] | F_UNCLASSIFIED | e7uojD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth H] | F_UNCLASSIFIED | e7uojH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
O [auth K] | F_UNCLASSIFIED | e7uojK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth L] | F_UNCLASSIFIED | e7uojL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth E] | F_UNCLASSIFIED | e7uojE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
P [auth M] | F_UNCLASSIFIED | e7uojM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
K [auth e] | F_UNCLASSIFIED | e7uoje1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth m] | F_UNCLASSIFIED | e7uojm1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth l] | F_UNCLASSIFIED | e7uojl1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth h] | F_UNCLASSIFIED | e7uojh1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth k] | F_UNCLASSIFIED | e7uojk1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
L [auth d] | F_UNCLASSIFIED | e7uojd1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: F_UNCLASSIFIED | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth h], L [auth d], R [auth k] | Heavy Chain | IGHV4 | - | envelope glycoprotein gp120 | SAbDab (2024-10-11) |
Thera-SAbDab Antibody Annotation Thera-SAbDab Database Homepage
Chain | Name | Target | Provenance Source |
---|---|---|---|
E [auth l], K [auth e], Q [auth m] | Elipovimab | HIV-1 gp120 | Therapeutic SAbDab (2024-10-11) |
F [auth h], L [auth d], R [auth k] | Elipovimab | HIV-1 gp120 | Therapeutic SAbDab (2024-10-11) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G], G [auth A], M [auth I] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
B, H [auth C], N [auth J] | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |