7U3D
Structure of S. venezuelae GlgX-c-di-GMP-acarbose complex (4.6)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CBM_48 | e7u3dA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_48 | ECOD (1.6) |
A | Alpha-amylase_C_1 | e7u3dA1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C_1 | ECOD (1.6) |
A | Alpha-amylase | e7u3dA3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
B [auth F] | CBM_48 | e7u3dF3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_48 | ECOD (1.6) |
B [auth F] | Alpha-amylase_C_1 | e7u3dF1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C_1 | ECOD (1.6) |
B [auth F] | Alpha-amylase | e7u3dF2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
C [auth B] | CBM_48 | e7u3dB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_48 | ECOD (1.6) |
C [auth B] | Alpha-amylase_C_1 | e7u3dB3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C_1 | ECOD (1.6) |
C [auth B] | Alpha-amylase | e7u3dB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
D [auth C] | CBM_48 | e7u3dC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_48 | ECOD (1.6) |
D [auth C] | Alpha-amylase_C_1 | e7u3dC3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: Alpha-amylase_C_1 | ECOD (1.6) |
D [auth C] | Alpha-amylase | e7u3dC2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth F], C [auth B], D [auth C] | PF02922 | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) (CBM_48) | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. | Domain |
A, B [auth F], C [auth B], D [auth C] | PF00128 | Alpha amylase, catalytic domain (Alpha-amylase) | Alpha amylase, catalytic domain | Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth F], C [auth B], D [auth C] | IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain |
A, B [auth F], C [auth B], D [auth C] | IPR011837 | Glycogen debranching enzyme, GlgX type | Family |
A, B [auth F], C [auth B], D [auth C] | IPR013783 | Immunoglobulin-like fold | Homologous Superfamily |
A, B [auth F], C [auth B], D [auth C] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
A, B [auth F], C [auth B], D [auth C] | IPR044505 | Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain | Domain |
A, B [auth F], C [auth B], D [auth C] | IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily |
A, B [auth F], C [auth B], D [auth C] | IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily |
A, B [auth F], C [auth B], D [auth C] | IPR004193 | Glycoside hydrolase, family 13, N-terminal | Domain |