7U3B

Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	CBM_48	e7u3bC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
A [auth C]	Alpha-amylase_C_1	e7u3bC2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
A [auth C]	Alpha-amylase	e7u3bC3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
B [auth D]	CBM_48	e7u3bD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
B [auth D]	Alpha-amylase_C_1	e7u3bD1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
B [auth D]	Alpha-amylase	e7u3bD3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
C [auth E]	CBM_48	e7u3bE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
C [auth E]	Alpha-amylase_C_1	e7u3bE1	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
C [auth E]	Alpha-amylase	e7u3bE3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
D [auth F]	CBM_48	e7u3bF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
D [auth F]	Alpha-amylase_C_1	e7u3bF2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
D [auth F]	Alpha-amylase	e7u3bF3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
E [auth G]	CBM_48	e7u3bG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
E [auth G]	Alpha-amylase_C_1	e7u3bG3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
E [auth G]	Alpha-amylase	e7u3bG2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
F [auth H]	CBM_48	e7u3bH3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
F [auth H]	Alpha-amylase_C_1	e7u3bH2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
F [auth H]	Alpha-amylase	e7u3bH1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
G [auth I]	CBM_48	e7u3bI1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
G [auth I]	Alpha-amylase_C_1	e7u3bI2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
G [auth I]	Alpha-amylase	e7u3bI3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)
H [auth J]	CBM_48	e7u3bJ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CBM_48	ECOD (1.6)
H [auth J]	Alpha-amylase_C_1	e7u3bJ3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: Alpha-amylase_C_1	ECOD (1.6)
H [auth J]	Alpha-amylase	e7u3bJ2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Alpha-amylase	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain) (CBM_48)	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)	This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase.	Domain
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	PF00128	Alpha amylase, catalytic domain (Alpha-amylase)	Alpha amylase, catalytic domain	Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, a ...	Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	Glycogen debranching enzyme GlgX	binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity glycogen debranching enzyme activity	carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process cellular metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process cellular metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process metabolic process energy reserve metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR006047	Glycosyl hydrolase, family 13, catalytic domain	Domain
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR011837	Glycogen debranching enzyme, GlgX type	Family
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR044505	Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain	Domain
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR004193	Glycoside hydrolase, family 13, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

7U3B

Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage