7THQ
Crystal structure of PltF trapped with PigG using a proline adenosine vinylsulfonamide inhibitor
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | AMP-binding_3rd | e7thqB3 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_3rd | ECOD (1.6) |
A [auth B] | AMP-binding_C | e7thqB2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: a+b domain in acetyl-CoA synthetase-like proteins (From Topology) | T: a+b domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_C | ECOD (1.6) |
A [auth B] | AMP-binding_1st | e7thqB4 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_1st | ECOD (1.6) |
A [auth B] | AMP-binding_2nd | e7thqB1 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_2nd | ECOD (1.6) |
C [auth A] | AMP-binding_3rd | e7thqA1 | A: beta barrels | X: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | H: beta-barrel domain in acetyl-CoA synthetase-like proteins (From Topology) | T: beta-barrel domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_3rd | ECOD (1.6) |
C [auth A] | AMP-binding_C | e7thqA3 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: a+b domain in acetyl-CoA synthetase-like proteins (From Topology) | T: a+b domain in acetyl-CoA synthetase-like proteins | F: AMP-binding_C | ECOD (1.6) |
C [auth A] | AMP-binding_1st | e7thqA4 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_1st | ECOD (1.6) |
C [auth A] | AMP-binding_2nd | e7thqA2 | A: a/b three-layered sandwiches | X: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | H: Rossmann-like domain in Acetyl-CoA synthetase-like proteins (From Topology) | T: Rossmann-like domain in Acetyl-CoA synthetase-like proteins | F: AMP-binding_2nd | ECOD (1.6) |
B [auth E] | PP-binding | e7thqE1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PP-binding | ECOD (1.6) |
D [auth C] | PP-binding | e7thqC1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PP-binding | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], C [auth A] | PF00501 | AMP-binding enzyme (AMP-binding) | AMP-binding enzyme | - | Family |
A [auth B], C [auth A] | PF13193 | AMP-binding enzyme C-terminal domain (AMP-binding_C) | AMP-binding enzyme C-terminal domain | This is a small domain that is found C terminal to Pfam:PF00501. It has a central beta sheet core that is flanked by alpha helices. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], C [auth A] | IPR020459 | AMP-binding | Domain |
A [auth B], C [auth A] | IPR010071 | Amino acid adenylation domain | Domain |
A [auth B], C [auth A] | IPR020845 | AMP-binding, conserved site | Conserved Site |
A [auth B], C [auth A] | IPR045851 | AMP-binding enzyme, C-terminal domain superfamily | Homologous Superfamily |
A [auth B], C [auth A] | IPR042099 | ANL, N-terminal domain | Homologous Superfamily |
A [auth B], C [auth A] | IPR025110 | AMP-binding enzyme, C-terminal domain | Domain |
A [auth B], C [auth A] | IPR000873 | AMP-dependent synthetase/ligase domain | Domain |
B [auth E], D [auth C] | IPR009081 | Phosphopantetheine binding ACP domain | Domain |
B [auth E], D [auth C] | IPR036736 | ACP-like superfamily | Homologous Superfamily |