7T4O

CryoEM structure of Methylococcus capsulatus (Bath) pMMO treated with potassium cyanide in a native lipid nanodisc at 3.65 Angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Monooxygenase subunit B transmembrane domain-like	8095934	3002711	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	Monooxygenase subunit B C-terminal domain-like	8095935	3002712	SCOP2B (2021-05-27)
A	SCOP2B Superfamily	PapD-like	8095933	3002067	SCOP2B (2021-05-27)
H [auth E]	SCOP2B Superfamily	Monooxygenase subunit B transmembrane domain-like	8095934	3002711	SCOP2B (2021-05-27)
H [auth E]	SCOP2B Superfamily	PapD-like	8095933	3002067	SCOP2B (2021-05-27)
H [auth E]	SCOP2B Superfamily	Monooxygenase subunit B C-terminal domain-like	8095935	3002712	SCOP2B (2021-05-27)
I	SCOP2B Superfamily	Monooxygenase subunit B C-terminal domain-like	8095935	3002712	SCOP2B (2021-05-27)
I	SCOP2B Superfamily	PapD-like	8095933	3002067	SCOP2B (2021-05-27)
I	SCOP2B Superfamily	Monooxygenase subunit B transmembrane domain-like	8095934	3002711	SCOP2B (2021-05-27)
C [auth B]	SCOP2B Superfamily	Gx transporter-like	8095951	3002268	SCOP2B (2021-05-27)
F	SCOP2B Superfamily	Gx transporter-like	8095951	3002268	SCOP2B (2021-05-27)
G [auth J]	SCOP2B Superfamily	Gx transporter-like	8095951	3002268	SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF04744	e7t4oA3	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
A	PF04744	e7t4oA2	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
H [auth E]	PF04744	e7t4oE2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
H [auth E]	PF04744	e7t4oE1	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
I	PF04744	e7t4oI2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF04744	ECOD (1.6)
I	PF04744	e7t4oI1	A: alpha bundles	X: Long alpha-hairpin	H: PmoB helical hairpin (From Topology)	T: PmoB helical hairpin	F: PF04744	ECOD (1.6)
B [auth C]	PF04896	e7t4oC1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)
D [auth G]	PF04896	e7t4oG1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)
E [auth K]	PF04896	e7t4oK1	A: alpha bundles	X: STAT-like	H: Ammonia monooxygenase subunit C (From Topology)	T: Ammonia monooxygenase subunit C	F: PF04896	ECOD (1.6)
C [auth B]	PF02461	e7t4oB1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)
F	PF02461	e7t4oF1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)
G [auth J]	PF02461	e7t4oJ1	A: alpha bundles	X: PmoA (From Topology)	H: PmoA (From Topology)	T: PmoA	F: PF02461	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, H [auth E], I	PF04744	Monooxygenase subunit B protein (Monooxygenase_B)	Monooxygenase subunit B protein	-	Family
C [auth B], F, G [auth J]	PF02461	Ammonia monooxygenase (AMO)	Ammonia monooxygenase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, H [auth E], I	Particulate methane monooxygenase alpha subunit	monooxygenase activity oxidoreductase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	-	membrane cellular anatomical entity
B [auth C], D [auth G], E [auth K]	Ammonia monooxygenase/methane monooxygenase, subunit C family protein	cation binding ion binding binding metal ion binding small molecule binding	-	membrane cellular anatomical entity
C [auth B], F, G [auth J]	Particulate methane monooxygenase beta subunit	monooxygenase activity oxidoreductase activity catalytic activity	-	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, H [auth E], I	IPR006833	Ammonia monooxygenase/particulate methane monooxygenase, subunit B	Family
A, H [auth E], I	IPR023141	Ammonia/methane monooxygenase, subunit B, hairpin domain superfamily	Homologous Superfamily
A, H [auth E], I	IPR023303	Ammonia/methane monooxygenase, subunit B, C-terminal	Homologous Superfamily
A, H [auth E], I	IPR023301	Ammonia/methane monooxygenase, subunitB, N-terminal	Homologous Superfamily
B [auth C], D [auth G], E [auth K]	IPR006980	Ammonia monooxygenase/particulate methane monooxygenase, subunit C	Family
B [auth C], D [auth G], E [auth K]	IPR023349	Ammonia monooxygenase/particulate methane monooxygenase, subunit C domain superfamily	Homologous Superfamily
C [auth B], F, G [auth J]	IPR037001	Ammonia/particulate methane monooxygenase, subunit A superfamily	Homologous Superfamily
C [auth B], F, G [auth J]	IPR003393	Ammonia monooxygenase/particulate methane monooxygenase, subunit A	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B [auth C], C [auth B], D [auth G], E [auth K] A, B [auth C], C [auth B], D [auth G], E [auth K], F, G [auth J], H [auth E], I	OPM				Methane monooxygenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth B], D [auth G], E [auth K] A, B [auth C], C [auth B], D [auth G], E [auth K], F, G [auth J], H [auth E], I	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B [auth C], C [auth B], D [auth G], E [auth K] A, B [auth C], C [auth B], D [auth G], E [auth K], F, G [auth J], H [auth E], I	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B [auth C], C [auth B], D [auth G], E [auth K] A, B [auth C], C [auth B], D [auth G], E [auth K], F, G [auth J], H [auth E], I	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Oxygenases	Particulate methane monooxgenase (pMMO) in a native lipid nanodisc (MC01)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.