7SSA
Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Core histone-like | 8103853 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Core histone-like | 8103853 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e7ssaB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
F | F_UNCLASSIFIED | e7ssaF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
C | F_UNCLASSIFIED | e7ssaC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
G | F_UNCLASSIFIED | e7ssaG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
A | F_UNCLASSIFIED | e7ssaA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e7ssaE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
H | F_UNCLASSIFIED | e7ssaH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e7ssaD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
J [auth L] | F_UNCLASSIFIED | e7ssaL1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
I [auth K] | F_UNCLASSIFIED | e7ssaK1 | A: alpha duplicates or obligate multimers | X: HLH-like | H: HLH, helix-loop-helix DNA-binding domain (From Topology) | T: HLH, helix-loop-helix DNA-binding domain | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain | |
PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family | |
I [auth K], J [auth L] | PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR001951 | Histone H4 | Family | |
IPR035425 | CENP-T/Histone H4, histone fold | Domain | |
IPR019809 | Histone H4, conserved site | Conserved Site | |
IPR004823 | TATA box binding protein associated factor (TAF), histone-like fold domain | Domain | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR002119 | Histone H2A | Family | |
IPR032454 | Histone H2A, C-terminal domain | Domain | |
IPR032458 | Histone H2A conserved site | Conserved Site | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR000164 | Histone H3/CENP-A | Family | |
IPR009072 | Histone-fold | Homologous Superfamily | |
IPR007125 | Histone H2A/H2B/H3 | Domain | |
IPR000558 | Histone H2B | Family | |
I [auth K], J [auth L] | IPR047206 | Centromere-binding protein 1-like, bHLHzip domain | Domain |
I [auth K], J [auth L] | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain | Domain |
I [auth K], J [auth L] | IPR036638 | Helix-loop-helix DNA-binding domain superfamily | Homologous Superfamily |