7SRS
5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM)
External Resource: Annotation
- Domain Annotation: ECOD Classification
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
F [auth L] | V-set | e7srsL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
A [auth P] | V-set | e7srsP1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth Q] | V-set_8 | e7srsQ1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth R] | 7tm_1_2 | e7srsR1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1_2 | ECOD (1.6) |
D [auth C] | Arrestin_C | e7srsC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_C | ECOD (1.6) |
D [auth C] | Arrestin_N | e7srsC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Arrestin_N | ECOD (1.6) |
E [auth H] | V-set_10 | e7srsH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth L] | Light Chain | IGKV1 | Kappa | isoform 1b of beta-arrestin-1 | SAbDab (2024-10-25) |
A [auth P] | Light Chain | IGKV4 | Kappa | 5-hydroxytryptamine receptor 2b | SAbDab (2024-10-25) |
B [auth Q] | Heavy Chain | IGHV1 | - | 5-hydroxytryptamine receptor 2b | SAbDab (2024-10-25) |
E [auth H] | Heavy Chain | IGHV3 | - | isoform 1b of beta-arrestin-1 | SAbDab (2024-10-25) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth R] | PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family |
D [auth C] | PF00339 | Arrestin (or S-antigen), N-terminal domain (Arrestin_N) | Arrestin (or S-antigen), N-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with C-terminal domain. | Domain |
D [auth C] | PF02752 | Arrestin (or S-antigen), C-terminal domain (Arrestin_C) | Arrestin (or S-antigen), C-terminal domain | Ig-like beta-sandwich fold. Scop reports duplication with N-terminal domain. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth R] | IPR002231 | 5-hydroxytryptamine receptor family | Family |
C [auth R] | IPR000276 | G protein-coupled receptor, rhodopsin-like | Family |
C [auth R] | IPR017452 | GPCR, rhodopsin-like, 7TM | Domain |
C [auth R] | IPR000482 | 5-Hydroxytryptamine 2B receptor | Family |
D [auth C] | IPR000698 | Arrestin | Family |
D [auth C] | IPR011021 | Arrestin-like, N-terminal | Domain |
D [auth C] | IPR014753 | Arrestin, N-terminal | Homologous Superfamily |
D [auth C] | IPR014756 | Immunoglobulin E-set | Homologous Superfamily |
D [auth C] | IPR014752 | Arrestin-like, C-terminal | Homologous Superfamily |
D [auth C] | IPR017864 | Arrestin, conserved site | Conserved Site |
D [auth C] | IPR011022 | Arrestin C-terminal-like domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | G Protein-Coupled Receptors: Class A | 5-HT2B serotonin receptor - β arrestin-1 complex with bound LSD |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
C [auth R] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |