Models for C17 reconstruction of Outer Membrane Core Complex (OMCC) of Type IV Secretion System (T4SS) encoded by F-plasmid (pED208).
External Resource: Annotation
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
DA [auth EF13] | F_UNCLASSIFIED | e7spcEF131 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
EA [auth EF14] | F_UNCLASSIFIED | e7spcEF141 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
FA [auth EF15] | F_UNCLASSIFIED | e7spcEF151 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
GA [auth EF16] | F_UNCLASSIFIED | e7spcEF161 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
HA [auth EF17] | F_UNCLASSIFIED | e7spcEF171 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
S [auth EF2] | F_UNCLASSIFIED | e7spcEF21 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
T [auth EF3] | F_UNCLASSIFIED | e7spcEF31 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
V [auth EF5] | F_UNCLASSIFIED | e7spcEF51 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
W [auth EF6] | F_UNCLASSIFIED | e7spcEF61 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
X [auth EF7] | F_UNCLASSIFIED | e7spcEF71 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
Z [auth EF9] | F_UNCLASSIFIED | e7spcEF91 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
AA [auth EF10] | F_UNCLASSIFIED | e7spcEF101 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
BA [auth EF11] | F_UNCLASSIFIED | e7spcEF111 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
CA [auth EF12] | F_UNCLASSIFIED | e7spcEF121 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth EF1] | F_UNCLASSIFIED | e7spcEF11 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
U [auth EF4] | F_UNCLASSIFIED | e7spcEF41 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
Y [auth EF8] | F_UNCLASSIFIED | e7spcEF81 | A: beta barrels | X: CBF-like | H: TraF (From Topology) | T: TraF | F: F_UNCLASSIFIED | ECOD (1.6) |
Chains | Accession | Name | Description | Comments | Source |
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A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17] | PF09676 | Type IV conjugative transfer system lipoprotein (TraV) (TraV) | Type IV conjugative transfer system lipoprotein (TraV) | - | Family |
AA [auth EF10], BA [auth EF11], CA [auth EF12], DA [auth EF13], EA [auth EF14], FA [auth EF15], GA [auth EF16], HA [auth EF17], R [auth EF1], S [auth EF2], T [auth EF3], U [auth EF4], V [auth EF5], W [auth EF6], X [auth EF7], Y [auth EF8], Z [auth EF9] | PF03743 | Bacterial conjugation TrbI-like protein (TrbI) | Bacterial conjugation TrbI-like protein | - | Family |
Chains | Accession | Name | Type |
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A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17] | IPR014118 | Type IV conjugative transfer system protein TraV | Family |
AA [auth EF10], BA [auth EF11], CA [auth EF12], DA [auth EF13], EA [auth EF14], FA [auth EF15], GA [auth EF16], HA [auth EF17], R [auth EF1], S [auth EF2], T [auth EF3], U [auth EF4], V [auth EF5], W [auth EF6], X [auth EF7], Y [auth EF8], Z [auth EF9] | IPR005498 | Type IV secretion system, VirB10/TraB/TrbI | Family |
Chains | External Link | Type | Class | Superfamily | Family |
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A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17] | OPM | Transmembrane | Alpha-helical polytopic | Type IV secretory system | Type IV secretion system, VirB10/TraB /TrbI |
Chains | Resource Link | Group | Subgroup | Protein |
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A [auth AB1], B [auth AB2], C [auth AB3], D [auth AB4], E [auth AB5], F [auth AB6], G [auth AB7], H [auth AB8], I [auth AB9], J [auth AB10], K [auth AB11], L [auth AB12], M [auth AB13], N [auth AB14], O [auth AB15], P [auth AB16], Q [auth AB17] | mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Type IV Secretion Systems | outer-membrane core complex (inner ring) encoded by multi-drug resistance F plasmids, models for C13 reconstruction |