7S06

Cryo-EM structure of human GlcNAc-1-phosphotransferase A2B2 subcomplex

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF17102	Stealth protein CR3, conserved region 3 (Stealth_CR3)	Stealth protein CR3, conserved region 3	-	Family
A, B	PF17101	Stealth protein CR1, conserved region 1 (Stealth_CR1)	Stealth protein CR1, conserved region 1	-	Family
A, B	PF17103	Stealth protein CR4, conserved region 4 (Stealth_CR4)	Stealth protein CR4, conserved region 4	-	Family
A, B	PF00066	LNR domain (Notch)	LNR domain	The LNR (Lin-12/Notch repeat) domain is found in three tandem copies in Notch related proteins. The structure of the domain has been determined by NMR [1] and was shown to contain three disulphide bonds and coordinate a calcium ion. Three repeats ar ...	The LNR (Lin-12/Notch repeat) domain is found in three tandem copies in Notch related proteins. The structure of the domain has been determined by NMR [1] and was shown to contain three disulphide bonds and coordinate a calcium ion. Three repeats are also found in the PAPP-A peptidase [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups	protein localization cellular localization establishment of protein localization nitrogen compound transport transport protein targeting carbohydrate derivative metabolic process establishment of protein localization to vacuole lysosomal transport localization protein targeting to lysosome establishment of localization in cell cellular macromolecule localization protein metabolic process protein localization cellular localization establishment of protein localization nitrogen compound transport transport protein targeting carbohydrate derivative metabolic process establishment of protein localization to vacuole lysosomal transport localization protein targeting to lysosome establishment of localization in cell cellular macromolecule localization protein metabolic process protein targeting to vacuole primary metabolic process intracellular transport protein localization to vacuole N-glycan processing glycoprotein metabolic process establishment of localization protein localization to lysosome establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization metabolic process vacuolar transport cellular process macromolecule metabolic process intracellular protein transport N-glycan processing to lysosome secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region secretion by cell secretion of lysosomal enzymes carbohydrate phosphorylation carbohydrate metabolic process phosphorylation cellular metabolic process phosphate-containing compound metabolic process phosphorus metabolic process cellular component organization lysosome organization organelle organization vacuole organization lytic vacuole organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system Golgi membrane membrane bounding membrane of organelle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR021520	Stealth protein CR2, conserved region 2	Domain
A, B	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A, B	IPR035993	Notch-like domain superfamily	Homologous Superfamily
A, B	IPR010506	DMAP1-binding domain	Domain
A, B	IPR031357	Stealth protein CR3, conserved region 3	Domain
A, B	IPR047141	Stealth family	Family
A, B	IPR000800	Notch domain	Domain
A, B	IPR031358	Stealth protein CR1, conserved region 1	Domain
A, B	IPR002048	EF-hand domain	Domain
A, B	IPR041536	N-acetylglucosamine-1-phosphotransferase subunit alpha/beta, regulatory domain	Domain
A, B	IPR031356	Stealth protein CR4, conserved region 4	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q3T906	mucolipidosis type II mucolipidosis type III sialidosis type 2 osteogenesis imperfecta pilocytic astrocytoma psoriasis astrocytic tumor craniosynostosis Hyperammonemia invasive ductal breast carcinoma malignant colon neoplasm malignant mesothelioma mucopolysaccharidosis type 3 ovarian cancer primitive neuroectodermal tumor mucolipidosis type II mucolipidosis type III sialidosis type 2 osteogenesis imperfecta pilocytic astrocytoma psoriasis astrocytic tumor craniosynostosis Hyperammonemia invasive ductal breast carcinoma malignant colon neoplasm malignant mesothelioma mucopolysaccharidosis type 3 ovarian cancer primitive neuroectodermal tumor rheumatoid arthritis atypical teratoid rhabdoid tumor subependymal giant cell astrocytoma glioblastoma inborn errors of metabolism large cell medulloblastoma malignant ependymoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Sanfilippo syndrome type A B-cell chronic lymphocytic leukemia systemic lupus erythematosus hydrops fetalis intellectual disability lysosomal storage disease malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.