Skip to main content

 7RK9 | pdb_00007rk9

Cryo-EM Structure of Adeno-Associated Virus Serotype 1 with Engineered Peptide Domain PHP.B (AAV1-PHP.B)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ZA [auth AB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
Z [auth AA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
YA [auth ZA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
XA [auth YA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
WA [auth XA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
VA [auth WA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
UA [auth VA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
TA [auth UA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
TSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
SA [auth TA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
RA [auth SA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
QA [auth RA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
PA [auth QA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
OA [auth PA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
NA [auth OA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
MA [auth NA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
LA [auth MA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
KA [auth LA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
JA [auth KA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
IA [auth JA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HB [auth IB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HA [auth IA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GB [auth HB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GA [auth HA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FB [auth GB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FA [auth GA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
EB [auth FB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
EA [auth FA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DB [auth EB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DA [auth EA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CB [auth DB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CA [auth DA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BB [auth CB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BA [auth CA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
AB [auth BB]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
AA [auth BA]SCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyssDNA viruses 8071438 3000931 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ZA [auth AB]Ran_BP1e7rk9AB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
Z [auth AA]Ran_BP1e7rk9AA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
YA [auth ZA]Ran_BP1e7rk9ZA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
Y [auth Z]Ran_BP1e7rk9Z1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
XA [auth YA]Ran_BP1e7rk9YA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
X [auth Y]Ran_BP1e7rk9Y1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
WA [auth XA]Ran_BP1e7rk9XA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
W [auth X]Ran_BP1e7rk9X1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
VA [auth WA]Ran_BP1e7rk9WA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
V [auth W]Ran_BP1e7rk9W1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
UA [auth VA]Ran_BP1e7rk9VA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
U [auth V]Ran_BP1e7rk9V1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
TA [auth UA]Ran_BP1e7rk9UA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
TRan_BP1e7rk9T1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
SA [auth TA]Ran_BP1e7rk9TA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
SRan_BP1e7rk9S1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
RA [auth SA]Ran_BP1e7rk9SA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
RRan_BP1e7rk9R1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
QA [auth RA]Ran_BP1e7rk9RA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
QRan_BP1e7rk9Q1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
PA [auth QA]Ran_BP1e7rk9QA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
PRan_BP1e7rk9P1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
OA [auth PA]Ran_BP1e7rk9PA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
ORan_BP1e7rk9O1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
NA [auth OA]Ran_BP1e7rk9OA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
NRan_BP1e7rk9N1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
MA [auth NA]Ran_BP1e7rk9NA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
MRan_BP1e7rk9M1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
LA [auth MA]Ran_BP1e7rk9MA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
LRan_BP1e7rk9L1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
KA [auth LA]Ran_BP1e7rk9LA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
KRan_BP1e7rk9K1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
JA [auth KA]Ran_BP1e7rk9KA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
JRan_BP1e7rk9J1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
IA [auth JA]Ran_BP1e7rk9JA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
IRan_BP1e7rk9I1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
HB [auth IB]Ran_BP1e7rk9IB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
HA [auth IA]Ran_BP1e7rk9IA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
HRan_BP1e7rk9H1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
GB [auth HB]Ran_BP1e7rk9HB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
GA [auth HA]Ran_BP1e7rk9HA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
GRan_BP1e7rk9G1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
FB [auth GB]Ran_BP1e7rk9GB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
FA [auth GA]Ran_BP1e7rk9GA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
FRan_BP1e7rk9F1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
EB [auth FB]Ran_BP1e7rk9FB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
EA [auth FA]Ran_BP1e7rk9FA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
ERan_BP1e7rk9E1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
DB [auth EB]Ran_BP1e7rk9EB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
DA [auth EA]Ran_BP1e7rk9EA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
DRan_BP1e7rk9D1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
CB [auth DB]Ran_BP1e7rk9DB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
CA [auth DA]Ran_BP1e7rk9DA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
CRan_BP1e7rk9C1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
BB [auth CB]Ran_BP1e7rk9CB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
BA [auth CA]Ran_BP1e7rk9CA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
BRan_BP1e7rk9B1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
AB [auth BB]Ran_BP1e7rk9BB1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
AA [auth BA]Ran_BP1e7rk9BA1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: Ran_BP1ECOD (v295.2)
ARNase_He7rk9A1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: RNase_HECOD (v295.2)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013607Phospholipase A2-like domainDomain
IPR016184Capsid/spike protein, ssDNA virusHomologous Superfamily
IPR001403Coat protein VP1/VP2, ParvovirusDomain
IPR036952Parvovirus coat protein VP1/VP2Homologous Superfamily