7QO1
complex of DNA ligase I and FEN1 on PCNA and DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA ligase/mRNA capping enzyme catalytic domain | 8043722 | 3000798 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | Nucleic acid-binding proteins | 8043720 | 3000135 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | ATP-dependent DNA ligase DNA-binding domain | 8043718 | 3001985 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2021-05-27) |
C [auth F] | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2021-05-27) |
C [auth F] | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2021-05-27) |
D [auth G] | SCOP2B Superfamily | DNA clamp | 8032796 | 3000780 | SCOP2B (2021-05-27) |
D [auth G] | SCOP2B Superfamily | DNA clamp | 8032799 | 3000780 | SCOP2B (2021-05-27) |
H [auth Y] | SCOP2B Superfamily | 5' to 3' exonuclease C-terminal subdomain | 8032928 | 3000537 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF04679 | e7qo1A2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF04679 | ECOD (1.6) |
A | PF04675 | e7qo1A4 | A: alpha bundles | X: ATP-dependent DNA ligase DNA-binding domain (From Topology) | H: ATP-dependent DNA ligase DNA-binding domain (From Topology) | T: ATP-dependent DNA ligase DNA-binding domain | F: PF04675 | ECOD (1.6) |
A | PF01068 | e7qo1A3 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: PF01068 | ECOD (1.6) |
B | PF00705 | e7qo1B2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
B | PF02747 | e7qo1B1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
C [auth F] | PF00705 | e7qo1F2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
C [auth F] | PF02747 | e7qo1F1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
D [auth G] | PF00705 | e7qo1G1 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF00705 | ECOD (1.6) |
D [auth G] | PF02747 | e7qo1G2 | A: a+b two layers | X: DNA clamp (From Topology) | H: DNA clamp (From Topology) | T: DNA clamp | F: PF02747 | ECOD (1.6) |
H [auth Y] | F_UNCLASSIFIED | e7qo1Y1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth Y] | PF00752,PF00867 | e7qo1Y2 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: PF00752,PF00867 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF04675 | DNA ligase N terminus (DNA_ligase_A_N) | DNA ligase N terminus | - | Family | |
PF01068 | ATP dependent DNA ligase domain (DNA_ligase_A_M) | ATP dependent DNA ligase domain | This domain belongs to a more diverse superfamily, including Pfam:PF01331 and Pfam:PF01653 [3]. | Domain | |
PF04679 | ATP dependent DNA ligase C terminal region (DNA_ligase_A_C) | ATP dependent DNA ligase C terminal region | - | Family | |
B, C [auth F], D [auth G] | PF02747 | Proliferating cell nuclear antigen, C-terminal domain (PCNA_C) | Proliferating cell nuclear antigen, C-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
B, C [auth F], D [auth G] | PF00705 | Proliferating cell nuclear antigen, N-terminal domain (PCNA_N) | Proliferating cell nuclear antigen, N-terminal domain | N-terminal and C-terminal domains of PCNA are topologically identical. Three PCNA molecules are tightly associated to form a closed ring encircling duplex DNA. | Domain |
H [auth Y] | PF00867 | XPG I-region (XPG_I) | XPG I-region | - | Family |