7QIX

Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B [auth D]	PF05162	e7qixD1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: PF05162	ECOD (1.6)
H [auth J]	PF00366,PF16205	e7qixJ1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00366,PF16205	ECOD (1.6)
J [auth L]	PF01249	e7qixL1	A: a+b two layers	X: 40S ribosomal protein rpS21 (S21e) (From Topology)	H: 40S ribosomal protein rpS21 (S21e) (From Topology)	T: 40S ribosomal protein rpS21 (S21e)	F: PF01249	ECOD (1.6)
K [auth M]	PF00164	e7qixM1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00164	ECOD (1.6)
M [auth O]	PF03719	e7qixO1	A: a+b two layers	X: Ribosomal protein S5 domain 2-like (From Topology)	H: Ribosomal protein S5 domain 2-like (From Topology)	T: Ribosomal protein S5 domain 2-like	F: PF03719	ECOD (1.6)
M [auth O]	PF00333	e7qixO3	A: a+b two layers	X: dsRBD-like	H: dsRNA-binding domain-like (From Topology)	T: dsRNA-binding domain-like	F: PF00333	ECOD (1.6)
M [auth O]	PF00333	e7qixO2	A: extended segments	X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)	T: N-terminal region in 40S ribosomal protein rpS2 (S5p)	F: PF00333	ECOD (1.6)
N [auth P]	PF01092	e7qixP1	A: beta barrels	X: Ribosomal protein L25-like	H: Ribosomal protein L25-like (From Topology)	T: Ribosomal protein L25-like	F: PF01092	ECOD (1.6)
O [auth Q]	PF00163,PF01479	e7qixQ1	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF00163,PF01479	ECOD (1.6)
P [auth R]	PF08069	e7qixR1	A: alpha arrays	X: HTH	H: 40S ribosomal protein S13 N-terminal domain (From Topology)	T: 40S ribosomal protein S13 N-terminal domain	F: PF08069	ECOD (1.6)
P [auth R]	PF00312	e7qixR2	A: alpha arrays	X: S15/NS1 RNA-binding domain (From Topology)	H: S15/NS1 RNA-binding domain (From Topology)	T: S15/NS1 RNA-binding domain	F: PF00312	ECOD (1.6)
R [auth U]	PF01282	e7qixU1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: PF01282	ECOD (1.6)
T [auth W]	PF04758	e7qixW1	A: extended segments	X: 40S ribosomal protein S30 (S30e) (From Topology)	H: 40S ribosomal protein S30 (S30e) (From Topology)	T: 40S ribosomal protein S30 (S30e)	F: PF04758	ECOD (1.6)
U [auth T]	PF00410	e7qixT2	A: a+b two layers	X: R3H domain-like	H: Ribosomal protein S8, N-terminal domain (From Topology)	T: Ribosomal protein S8, N-terminal domain	F: PF00410	ECOD (1.6)
U [auth T]	PF00410	e7qixT1	A: a+b two layers	X: Ribosomal protein S8, C-terminal domain (From Topology)	H: Ribosomal protein S8, C-terminal domain (From Topology)	T: Ribosomal protein S8, C-terminal domain	F: PF00410	ECOD (1.6)
L [auth N]	PF01283	e7qixN1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: PF01283	ECOD (1.6)
Q [auth S]	PF00411	e7qixS1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: PF00411	ECOD (1.6)
S [auth V]	PF01667	e7qixV1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: PF01667	ECOD (1.6)
C [auth E]	PF00318	e7qixE1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Ribosomal protein S2/SIS domain (From Topology)	T: Ribosomal protein S2/SIS domain	F: PF00318	ECOD (1.6)
D [auth F]	PF01015	e7qixF2	A: beta barrels	X: Ribosomal protein L25-like	H: 40S ribosomal protein S3A N-terminal domain (From Topology)	T: 40S ribosomal protein S3A N-terminal domain	F: PF01015	ECOD (1.6)
D [auth F]	PF01015	e7qixF1	A: a+b two layers	X: T-fold	H: 40S ribosomal protein S3A C-terminal domain (From Topology)	T: 40S ribosomal protein S3A C-terminal domain	F: PF01015	ECOD (1.6)
E [auth G]	PF00900	e7qixG1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: PF00900	ECOD (1.6)
E [auth G]	PF00467,PF16121	e7qixG2	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF00467,PF16121	ECOD (1.6)
E [auth G]	PF01479,PF08071	e7qixG3	A: a+b two layers	X: beta-Grasp	H: Ubiquitin-related	T: Alpha-L RNA-binding motif	F: PF01479,PF08071	ECOD (1.6)
F [auth H]	PF01251	e7qixH2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: 40S ribosomal protein S7-A (From Topology)	T: 40S ribosomal protein S7-A	F: PF01251	ECOD (1.6)
G [auth I]	PF01201	e7qixI1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: PF01201	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth D]	PF05162	Ribosomal protein L41 (Ribosomal_L41)	Ribosomal protein L41	-	Family
H [auth J]	PF00366	Ribosomal protein S17 (Ribosomal_S17)	Ribosomal protein S17	-	Domain
H [auth J]	PF16205	Ribosomal_S17 N-terminal (Ribosomal_S17_N)	Ribosomal_S17 N-terminal	-	Family
J [auth L]	PF01249	Ribosomal protein S21e (Ribosomal_S21e)	Ribosomal protein S21e	-	Family
K [auth M]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	-	Family
M [auth O]	PF03719	Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)	Ribosomal protein S5, C-terminal domain	-	Domain
M [auth O]	PF00333	Ribosomal protein S5, N-terminal domain (Ribosomal_S5)	Ribosomal protein S5, N-terminal domain	-	Domain
N [auth P]	PF01092	Ribosomal protein S6e (Ribosomal_S6e)	Ribosomal protein S6e	-	Family
O [auth Q]	PF00163	Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)	Ribosomal protein S4/S9 N-terminal domain	-	Family
O [auth Q]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
P [auth R]	PF00312	Ribosomal protein S15 (Ribosomal_S15)	Ribosomal protein S15	-	Domain
R [auth U]	PF01282	Ribosomal protein S24e (Ribosomal_S24e)	Ribosomal protein S24e	-	Family
U [auth T]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8	-	Domain
Q [auth S]	PF00411	Ribosomal protein S11 (Ribosomal_S11)	Ribosomal protein S11	-	Family
C [auth E]	PF00318	Ribosomal protein S2 (Ribosomal_S2)	Ribosomal protein S2	-	Family
E [auth G]	PF00900	Ribosomal family S4e (Ribosomal_S4e)	Ribosomal family S4e	-	Family
E [auth G]	PF16121	40S ribosomal protein S4 C-terminus (40S_S4_C)	40S ribosomal protein S4 C-terminus	-	Family
E [auth G]	PF08071	RS4NT (NUC023) domain (RS4NT)	RS4NT (NUC023) domain	This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].	Domain
E [auth G]	PF00467	KOW motif (KOW)	KOW motif	-	Family
F [auth H]	PF01251	Ribosomal protein S7e (Ribosomal_S7e)	Ribosomal protein S7e	-	Family
G [auth I]	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 2]	18S rRNA body	-	-	-
B [auth D]	60S ribosomal protein L41	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
H [auth J]	Ribosomal_S17_N domain-containing protein	binding organic cyclic compound binding nucleic acid binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
I [auth K]	40S ribosomal protein S17	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
J [auth L]	40S ribosomal protein S21	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA RNA 3'-end processing cellular component organization or biogenesis RNA processing ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA RNA 3'-end processing cellular component organization or biogenesis RNA processing rRNA metabolic process endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process rRNA 3'-end processing cellular process metabolic process macromolecule metabolic process endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) maturation of 5.8S rRNA maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) organonitrogen compound metabolic process organonitrogen compound biosynthetic process translation protein metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
K [auth M]	40S body ribosomal protein uS12	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle membrane-bounded organelle plastid intracellular membrane-bounded organelle chloroplast
M [auth O]	S5 DRBM domain-containing protein	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
N [auth P]	40S ribosomal protein S6	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
O [auth Q]	40S body ribosomal protein uS4	structural molecule activity structural constituent of ribosome RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
P [auth R]	30S ribosomal protein S15, chloroplastic	RNA binding small ribosomal subunit rRNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol
R [auth U]	40S ribosomal protein S24	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle
T [auth W]	40S ribosomal protein S30	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
U [auth T]	40S ribosomal protein S15a-1	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
V [auth X]	Ribosomal protein L19	RNA binding binding organic cyclic compound binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit protein-containing complex intracellular anatomical structure cellular anatomical entity intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol large ribosomal subunit non-membrane-bounded organelle
L [auth N]	40S ribosomal protein S26	RNA binding binding organic cyclic compound binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
Q [auth S]	Ribosomal protein S14	transferase activity phospho-N-acetylmuramoyl-pentapeptide-transferase activity catalytic activity phosphotransferase activity, for other substituted phosphate groups transferase activity, transferring phosphorus-containing groups structural molecule activity structural constituent of ribosome	cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization cellular biosynthetic process cellular metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process metabolic process cellular component organization cell wall organization or biogenesis cell wall organization cellular process cellular component organization or biogenesis external encapsulating structure organization cellular biosynthetic process cellular metabolic process macromolecule biosynthetic process cellular component biogenesis cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process metabolic process macromolecule metabolic process organonitrogen compound metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression protein metabolic process	membrane cellular anatomical entity protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
S [auth V]	40S ribosomal protein S27	-	-	-
C [auth E]	40S ribosomal protein SA	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly ribosomal small subunit assembly protein-RNA complex assembly ribosomal small subunit biogenesis cellular component organization cellular component biogenesis ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process protein metabolic process macromolecule metabolic process	90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle intracellular non-membrane-bounded organelle ribosome 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
D [auth F]	40S ribosomal protein S3a	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome intracellular anatomical structure cytoplasm cellular anatomical entity cytosol cytosolic small ribosomal subunit protein-containing complex small ribosomal subunit intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome non-membrane-bounded organelle
E [auth G]	40S body ribosomal protein eS4	RNA binding binding organic cyclic compound binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle
F [auth H]	40S ribosomal protein S7	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process ribonucleoprotein complex biogenesis cellular biosynthetic process cellular metabolic process RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process ribosomal small subunit biogenesis organonitrogen compound metabolic process organonitrogen compound biosynthetic process translation protein metabolic process	90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle intracellular non-membrane-bounded organelle ribosome 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle small-subunit processome
G [auth I]	40S ribosomal protein S8	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process cellular metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process organonitrogen compound metabolic process organonitrogen compound biosynthetic process translation protein metabolic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit cellular anatomical entity intracellular organelle ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex intracellular non-membrane-bounded organelle ribosome cytoplasm cytosol non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth D]	IPR007836	Large ribosomal subunit protein eS32	Family
H [auth J]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
H [auth J]	IPR019979	Small ribosomal subunit protein uS17, conserved site	Conserved Site
H [auth J]	IPR032440	Small ribosomal subunit protein uS17, N-terminal	Domain
H [auth J]	IPR001878	Zinc finger, CCHC-type	Domain
H [auth J]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
H [auth J]	IPR000266	Small ribosomal subunit protein uS17	Family
H [auth J]	IPR028333	Small ribosomal subunit protein uS17, archaeal/eukaryotic	Family
I [auth K]	IPR036401	Small ribosomal subunit protein eS17 superfamily	Homologous Superfamily
I [auth K]	IPR001210	Small ribosomal subunit protein eS17	Family
I [auth K]	IPR018273	Small ribosomal subunit protein eS17, conserved site	Conserved Site
J [auth L]	IPR038579	Small ribosomal subunit protein eS21 superfamily	Homologous Superfamily
J [auth L]	IPR018279	Small ribosomal subunit protein eS21, conserved site	Conserved Site
J [auth L]	IPR001931	Small ribosomal subunit protein eS21	Family
K [auth M]	IPR006032	Small ribosomal subunit protein uS12	Family
K [auth M]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
K [auth M]	IPR005680	Small ribosomal subunit protein uS12, eukaryotic/archaeal	Family
M [auth O]	IPR000851	Small ribosomal subunit protein uS5	Family
M [auth O]	IPR005711	Small ribosomal subunit protein uS5, eukaryotic/archaeal	Family
M [auth O]	IPR005324	Small ribosomal subunit protein uS5, C-terminal	Domain
M [auth O]	IPR013810	Small ribosomal subunit protein uS5, N-terminal	Domain
M [auth O]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
M [auth O]	IPR018192	Small ribosomal subunit protein uS5, N-terminal, conserved site	Conserved Site
M [auth O]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
N [auth P]	IPR014401	Small ribosomal subunit protein eS6-like	Family
N [auth P]	IPR001377	Small ribosomal subunit protein eS6	Family
N [auth P]	IPR018282	Small ribosomal subunit protein eS6, conserved site	Conserved Site
O [auth Q]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
O [auth Q]	IPR002942	RNA-binding S4 domain	Domain
O [auth Q]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
O [auth Q]	IPR005710	Small ribosomal subunit protein uS4, eukaryotic/archaeal	Family
O [auth Q]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
O [auth Q]	IPR022801	Small ribosomal subunit protein uS4	Family
P [auth R]	IPR012606	Small ribosomal subunit protein uS15, N-terminal	Domain
P [auth R]	IPR009068	uS15/NS1, RNA-binding domain superfamily	Homologous Superfamily
P [auth R]	IPR023029	Small ribosomal subunit protein uS15, archaea/eukaryotes	Family
P [auth R]	IPR000589	Small ribosomal subunit protein uS15	Family
R [auth U]	IPR001976	Small ribosomal subunit protein eS24	Family
R [auth U]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
R [auth U]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
T [auth W]	IPR006846	Small ribosomal subunit protein eS30	Family
U [auth T]	IPR000630	Small ribosomal subunit protein uS8	Family
U [auth T]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
U [auth T]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
V [auth X]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
V [auth X]	IPR039547	Large ribosomal subunit protein eL19	Family
V [auth X]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
V [auth X]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
V [auth X]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain
V [auth X]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
L [auth N]	IPR038551	Ribosomal protein eS26 superfamily	Homologous Superfamily
L [auth N]	IPR000892	Small ribosomal subunit protein eS26	Family
L [auth N]	IPR047864	Ribosomal protein eS26, conserved site	Conserved Site
Q [auth S]	IPR018480	Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site	Conserved Site
Q [auth S]	IPR003524	Phospho-N-acetylmuramoyl-pentapeptide transferase	Family
Q [auth S]	IPR001971	Small ribosomal subunit protein uS11	Family
Q [auth S]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
Q [auth S]	IPR000715	Glycosyl transferase, family 4	Family
Q [auth S]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
C [auth E]	IPR005707	Small ribosomal subunit protein uS2, eukaryotic/archaeal	Family
C [auth E]	IPR023591	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Homologous Superfamily
C [auth E]	IPR018130	Small ribosomal subunit protein uS2, conserved site	Conserved Site
C [auth E]	IPR001865	Small ribosomal subunit protein uS2	Family
C [auth E]	IPR027498	Small ribosomal subunit protein uS2, eukaryotic	Family
D [auth F]	IPR001593	Small ribosomal subunit protein eS1	Family
D [auth F]	IPR018281	Small ribosomal subunit protein eS1, conserved site	Conserved Site
D [auth F]	IPR027500	Small ribosomal subunit protein eS1, eukaryotes	Family
E [auth G]	IPR018199	Small ribosomal subunit protein eS4, N-terminal, conserved site	Conserved Site
E [auth G]	IPR013843	Small ribosomal subunit protein eS4, N-terminal	Domain
E [auth G]	IPR032277	Small ribosomal subunit protein eS4, C-terminal domain	Domain
E [auth G]	IPR002942	RNA-binding S4 domain	Domain
E [auth G]	IPR013845	Small ribosomal subunit protein eS4, central region	Domain
E [auth G]	IPR000876	Small ribosomal subunit protein eS4	Family
E [auth G]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
E [auth G]	IPR038237	Small ribosomal subunit protein eS4, central domain superfamily	Homologous Superfamily
E [auth G]	IPR041982	Small ribosomal subunit protein eS4, KOW domain	Domain
E [auth G]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
E [auth G]	IPR005824	KOW	Domain
F [auth H]	IPR000554	Small ribosomal subunit protein eS7	Family
F [auth H]	IPR047861	Small ribosomal subunit protein eS7, conserved site	Conserved Site
G [auth I]	IPR001047	Small ribosomal subunit protein eS8	Family
G [auth I]	IPR042563	Small ribosomal subunit protein eS8 subdomain, eukaryotes	Homologous Superfamily
G [auth I]	IPR022309	Ribosomal protein eS8/ribosomal biogenesis NSA2	Family
G [auth I]	IPR018283	Small ribosomal subunit protein eS8, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7QIX

Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage