Cryo-EM structure of the ribosome from Encephalitozoon cuniculi
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth C4] | SCOP2 Family | Ribosomal protein L18p and S11 | 8106622 | 4000555 | SCOP2 (2022-06-29) |
| I [auth C4] | SCOP2 Superfamily | Translational machinery components | 8106623 | 3000571 | SCOP2 (2022-06-29) |
| K [auth C6] | SCOP2 Family | Translational machinery components | 8106624 | 4000951 | SCOP2 (2022-06-29) |
| K [auth C6] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8106625 | 3000100 | SCOP2 (2022-06-29) |
| M [auth C8] | SCOP2 Family | Ribosomal protein S13 | 8106612 | 4000260 | SCOP2 (2022-06-29) |
| M [auth C8] | SCOP2 Superfamily | S13-like H2TH domain | 8106613 | 3000053 | SCOP2 (2022-06-29) |
| Q [auth D2] | SCOP2 Family | Ribosomal protein S8 | 8106594 | 4002027 | SCOP2 (2022-06-29) |
| Q [auth D2] | SCOP2 Superfamily | Ribosomal protein S8 | 8106595 | 3000709 | SCOP2 (2022-06-29) |
| U [auth D6] | SCOP2 Family | Ribosomal protein S26e | 8106610 | 4006236 | SCOP2 (2022-06-29) |
| U [auth D6] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8106611 | 3000068 | SCOP2 (2022-06-29) |
| W [auth D8] | SCOP2 Family | Cold shock DNA-binding domain-like | 8106596 | 4001909 | SCOP2 (2022-06-29) |
| W [auth D8] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8106597 | 3000135 | SCOP2 (2022-06-29) |
| BA [auth L3] | SCOP2 Family | Ribosomal protein L3 | 8106592 | 4002103 | SCOP2 (2022-06-29) |
| BA [auth L3] | SCOP2 Superfamily | Translational proteins | 8106593 | 3000811 | SCOP2 (2022-06-29) |
| DA [auth L5] | SCOP2 Family | Ribosomal protein L5e and archael L18-like | 8106614 | 4006591 | SCOP2 (2022-06-29) |
| DA [auth L5] | SCOP2 Superfamily | Translational machinery components | 8106615 | 3000571 | SCOP2 (2022-06-29) |
| MA [auth M5] | SCOP2 Family | L15e | 8106600 | 4000945 | SCOP2 (2022-06-29) |
| MA [auth M5] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8106601 | 3000210 | SCOP2 (2022-06-29) |
| OA [auth M7] | SCOP2 Family | Ribosomal protein L22 | 8106606 | 4001212 | SCOP2 (2022-06-29) |
| OA [auth M7] | SCOP2 Superfamily | Ribosomal protein L22 | 8106607 | 3001078 | SCOP2 (2022-06-29) |
| QA [auth M9] | SCOP2 Family | Ribosomal protein L19 (L19e) | 8107691 | 4001138 | SCOP2 (2022-06-29) |
| QA [auth M9] | SCOP2 Superfamily | Ribosomal protein L19 (L19e) | 8107692 | 3000890 | SCOP2 (2022-06-29) |
| WA [auth N3] | SCOP2 Family | Ribosomal protein L14 | 8106604 | 4001826 | SCOP2 (2022-06-29) |
| WA [auth N3] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8106605 | 3000433 | SCOP2 (2022-06-29) |
| BB [auth N8] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8106542 | 4003555 | SCOP2 (2022-06-29) |
| BB [auth N8] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8106543 | 3001045 | SCOP2 (2022-06-29) |
| FB [auth O2] | SCOP2 Family | Ribosomal protein L32e | 8106616 | 4003517 | SCOP2 (2022-06-29) |
| FB [auth O2] | SCOP2 Superfamily | Ribosomal protein L32e | 8106617 | 3000982 | SCOP2 (2022-06-29) |
| HB [auth O4] | SCOP2 Family | Ribosomal protein L34e-like | 8106620 | 4006193 | SCOP2 (2022-06-29) |
| HB [auth O4] | SCOP2 Superfamily | Ribosomal protein L34e-like | 8106621 | 3002203 | SCOP2 (2022-06-29) |
| OB [auth P3] | SCOP2 Family | Ribosomal protein L37ae | 8106608 | 4003704 | SCOP2 (2022-06-29) |
| OB [auth P3] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8106609 | 3001320 | SCOP2 (2022-06-29) |
| UB [auth S5] | SCOP2 Family | Ribosomal protein S7 | 8106618 | 4001112 | SCOP2 (2022-06-29) |
| UB [auth S5] | SCOP2 Superfamily | Ribosomal protein S7 | 8106619 | 3000799 | SCOP2 (2022-06-29) |
| LB [auth O9] | SCOP2 Family | ribosomal protein l39e | 8106598 | 4001518 | SCOP2 (2022-06-29) |
| LB [auth O9] | SCOP2 Superfamily | Ribosomal protein L39e | 8106599 | 3001756 | SCOP2 (2022-06-29) |
| JA [auth M1] | SCOP2 Family | Ribosomal protein L5 | 8106626 | 4001498 | SCOP2 (2022-06-29) |
| JA [auth M1] | SCOP2 Superfamily | RL5-like | 8106627 | 3001709 | SCOP2 (2022-06-29) |
| IA [auth M0] | SCOP2 Family | Ribosomal protein L10e | 8106602 | 4001135 | SCOP2 (2022-06-29) |
| IA [auth M0] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8106603 | 3000884 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A [auth RA] | GST_C | e7qepRA1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| G [auth C2] | MlaD | e7qepC21 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MlaD | ECOD (v294.2) |
| H [auth C3] | GST_C | e7qepC31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| I [auth C4] | GST_C | e7qepC41 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| J [auth C5] | GST_C | e7qepC51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| K [auth C6] | GST_C | e7qepC61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| L [auth C7] | GST_C | e7qepC71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| M [auth C8] | GST_C | e7qepC81 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| N [auth C9] | GST_C | e7qepC91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| O [auth D0] | GST_C | e7qepD01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| P [auth D1] | GST_C | e7qepD11 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| Q [auth D2] | GST_C | e7qepD21 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| R [auth D3] | GST_C | e7qepD31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| T [auth D5] | GST_C | e7qepD51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| U [auth D6] | GST_C | e7qepD61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| V [auth D7] | GST_C | e7qepD71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| W [auth D8] | GST_C | e7qepD81 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| X [auth D9] | GST_C | e7qepD91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| BA [auth L3] | GST_C | e7qepL31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| DA [auth L5] | GST_C | e7qepL51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| EA [auth L6] | GST_C | e7qepL61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| HA [auth L9] | GST_C | e7qepL91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| KA [auth M3] | GST_C | e7qepM31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| LA [auth M4] | GST_C | e7qepM41 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| MA [auth M5] | GST_C | e7qepM51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| NA [auth M6] | GST_C | e7qepM61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| OA [auth M7] | GST_C | e7qepM71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| PA [auth M8] | GST_C | e7qepM81 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| QA [auth M9] | GST_C | e7qepM91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| RA [auth MD] | GST_C | e7qepMD1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| TA [auth N0] | GST_C | e7qepN01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| UA [auth N1] | GST_C | e7qepN11 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| VA [auth N2] | GST_C | e7qepN21 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| WA [auth N3] | GST_C | e7qepN31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| YA [auth N5] | GST_C | e7qepN51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| ZA [auth N6] | GST_C | e7qepN61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| AB [auth N7] | GST_C | e7qepN71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| BB [auth N8] | GST_C | e7qepN81 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| CB [auth N9] | GST_C | e7qepN91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| DB [auth O0] | GST_C | e7qepO01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| EB [auth O1] | GST_C | e7qepO11 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| FB [auth O2] | GST_C | e7qepO21 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| GB [auth O3] | GST_C | e7qepO31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| HB [auth O4] | GST_C | e7qepO41 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| IB [auth O5] | GST_C | e7qepO51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| JB [auth O6] | MlaD | e7qepO61 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MlaD | ECOD (v294.2) |
| KB [auth O7] | GST_C | e7qepO71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| MB [auth P0] | GST_C | e7qepP01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| NB [auth P2] | GST_C | e7qepP21 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| OB [auth P3] | GST_C | e7qepP31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| PB [auth S0] | GST_C | e7qepS01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| QB [auth S1] | MlaD | e7qepS11 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MlaD | ECOD (v294.2) |
| RB [auth S2] | GST_C | e7qepS21 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| SB [auth S3] | GST_C | e7qepS31 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| TB [auth S4] | GST_C | e7qepS41 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| UB [auth S5] | GST_C | e7qepS51 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| VB [auth S6] | GST_C | e7qepS61 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| WB [auth S7] | GST_C | e7qepS71 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| XB [auth S8] | GST_C | e7qepS81 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| YB [auth S9] | GST_C | e7qepS91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| LB [auth O9] | GST_C | e7qepO91 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| XA [auth N4] | MlaD | e7qepN41 | A: beta barrels | X: RNase A-like | H: Cytochrome P450 | T: Cytochrome P450 | F: MlaD | ECOD (v294.2) |
| E [auth C0] | GST_C | e7qepC01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| JA [auth M1] | GST_C | e7qepM11 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| IA [auth M0] | GST_C | e7qepM01 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
| Y [auth E1] | GST_C | e7qepE11 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: GST_C | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| F [auth C1] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| G [auth C2] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| H [auth C3] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| I [auth C4] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| J [auth C5] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| K [auth C6] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| M [auth C8] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| N [auth C9] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| O [auth D0] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| P [auth D1] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| Q [auth D2] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| R [auth D3] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| S [auth D4] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| U [auth D6] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| V [auth D7] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| Z [auth L1] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| AA [auth L2] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| CA [auth L4] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| DA [auth L5] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| DA [auth L5] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| FA [auth L7] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| GA [auth L8] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| HA [auth L9] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| KA [auth M3] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| MA [auth M5] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| NA [auth M6] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| OA [auth M7] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| PA [auth M8] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| QA [auth M9] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| QA [auth M9] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| RA [auth MD] | PF05907 | CXXC motif containing zinc binding protein, eukaryotic (CXXC_Zn-b_euk) | CXXC motif containing zinc binding protein, eukaryotic | - | Family |
| TA [auth N0] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| WA [auth N3] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| YA [auth N5] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| ZA [auth N6] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| ZA [auth N6] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| BB [auth N8] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| CB [auth N9] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| EB [auth O1] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| FB [auth O2] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| GB [auth O3] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| HB [auth O4] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
| IB [auth O5] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| JB [auth O6] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| KB [auth O7] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| MB [auth P0] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. | Domain |
| NB [auth P2] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| OB [auth P3] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| PB [auth S0] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| RB [auth S2] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| RB [auth S2] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| SB [auth S3] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| TB [auth S4] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| TB [auth S4] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| UB [auth S5] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| VB [auth S6] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| XB [auth S8] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| LB [auth O9] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| XA [auth N4] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| E [auth C0] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| JA [auth M1] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| JA [auth M1] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| IA [auth M0] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |














