7Q72
Structure of Pla1 in complex with Red1
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PAP_central_2nd | e7q72A2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: PAP/OAS1 substrate-binding domain | F: PAP_central_2nd | ECOD (1.6) |
A | PAP_RNA-bind | e7q72A3 | A: a+b two layers | X: Alpha-beta plaits | H: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology) | T: PAP/Archaeal CCA-adding enzyme, C-terminal domain | F: PAP_RNA-bind | ECOD (1.6) |
A | PAP_central_1st | e7q72A1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PAP_central_1st | ECOD (1.6) |
C [auth B] | PAP_central_2nd | e7q72B3 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: PAP/OAS1 substrate-binding domain | F: PAP_central_2nd | ECOD (1.6) |
C [auth B] | PAP_RNA-bind | e7q72B2 | A: a+b two layers | X: Alpha-beta plaits | H: PAP/Archaeal CCA-adding enzyme, C-terminal domain (From Topology) | T: PAP/Archaeal CCA-adding enzyme, C-terminal domain | F: PAP_RNA-bind | ECOD (1.6) |
C [auth B] | PAP_central_1st | e7q72B1 | A: a+b three layers | X: Nucleotidyltransferase-like | H: Nucleotidyltransferase (From Topology) | T: Nucleotidyltransferase | F: PAP_central_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF04926 | Poly(A) polymerase predicted RNA binding domain (PAP_RNA-bind) | Poly(A) polymerase predicted RNA binding domain | Based on its similarity structurally to the RNA recognition motif this domain is thought to be RNA binding [1]. | Domain |
A, C [auth B] | PF20750 | Poly(A) polymerase nucleotidyltransferase domain (PAP_NTPase) | Poly(A) polymerase nucleotidyltransferase domain | In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a templa ... | Domain |
A, C [auth B] | PF04928 | Poly(A) polymerase central domain (PAP_central) | Poly(A) polymerase central domain | In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a templa ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR007010 | Poly(A) polymerase, RNA-binding domain | Domain |
A, C [auth B] | IPR011068 | Nucleotidyltransferase, class I-like, C-terminal | Homologous Superfamily |
A, C [auth B] | IPR007012 | Poly(A) polymerase, central domain | Domain |
A, C [auth B] | IPR014492 | Poly(A) polymerase | Family |
A, C [auth B] | IPR043519 | Nucleotidyltransferase superfamily | Homologous Superfamily |
A, C [auth B] | IPR048840 | Poly(A) polymerase, nucleotidyltransferase domain | Domain |
B [auth C], D | IPR019607 | Putative zinc-finger domain | Domain |
B [auth C], D | IPR039278 | NURS complex subunit red1 | Family |