7Q57

Single Particle Cryo-EM structure of photosynthetic A10B10 glyceraldehyde-3-phospahte dehydrogenase from Spinacia oleracea.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth O]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
C [auth Q]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
E [auth A]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
G [auth C]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
I [auth G]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
K [auth E]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
M [auth I]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
O [auth K]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
Q [auth M]SCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
SSCOP2B SuperfamilyGAPDH-like8068923 3000043 SCOP2B (2021-05-27)
B [auth P]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
D [auth R]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
F [auth B]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
H [auth D]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
J [auth H]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
L [auth F]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
N [auth J]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
P [auth L]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
R [auth N]SCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)
TSCOP2B SuperfamilyGAPDH-like8056136 3000043 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth O]PF02800e7q57O1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
A [auth O]PF00044e7q57O2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
C [auth Q]PF02800e7q57Q2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
C [auth Q]PF00044e7q57Q1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
E [auth A]PF02800e7q57A1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
E [auth A]PF00044e7q57A2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
G [auth C]PF02800e7q57C2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
G [auth C]PF00044e7q57C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
I [auth G]PF02800e7q57G1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
I [auth G]PF00044e7q57G2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
K [auth E]PF02800e7q57E2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
K [auth E]PF00044e7q57E1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
M [auth I]PF02800e7q57I2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
M [auth I]PF00044e7q57I1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
O [auth K]PF02800e7q57K1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
O [auth K]PF00044e7q57K2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
Q [auth M]PF02800e7q57M1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
Q [auth M]PF00044e7q57M2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
SPF02800e7q57S2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
SPF00044e7q57S1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
B [auth P]PF02800e7q57P2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
B [auth P]PF00044e7q57P1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
D [auth R]PF02800e7q57R1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
D [auth R]PF00044e7q57R2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
F [auth B]PF02800e7q57B2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
F [auth B]PF00044e7q57B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
H [auth D]PF02800e7q57D1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
H [auth D]PF00044e7q57D2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
J [auth H]PF02800e7q57H1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
J [auth H]PF00044e7q57H2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
L [auth F]PF02800e7q57F1 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
L [auth F]PF00044e7q57F2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
N [auth J]PF02800e7q57J2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
N [auth J]PF00044e7q57J1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
P [auth L]PF02800e7q57L2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
P [auth L]PF00044e7q57L1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
R [auth N]PF02800e7q57N2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
R [auth N]PF00044e7q57N1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)
TPF02800e7q57T2 A: a+b two layersX: FwdE/GAPDH domain-likeH: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology)T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domainF: PF02800ECOD (1.6)
TPF00044e7q57T1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: PF00044ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.Domain
PF02800Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C)Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.Domain
PF00044Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N)Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domainGAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic,Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainDomain
IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active siteActive Site
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase familyFamily
IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domainDomain
IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type IFamily
IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainDomain
IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active siteActive Site
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase familyFamily
IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domainDomain
IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type IFamily