7Q54
Single Particle Cryo-EM structure of photosynthetic A4B4-glyceraldehyde 3-phosphate dehydrogenase from Spinacia oleracia.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth Q] | SCOP2B Superfamily | GAPDH-like | 8068923 | 3000043 | SCOP2B (2022-06-29) |
C [auth O] | SCOP2B Superfamily | GAPDH-like | 8068923 | 3000043 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | GAPDH-like | 8068923 | 3000043 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | GAPDH-like | 8068923 | 3000043 | SCOP2B (2022-06-29) |
B [auth R] | SCOP2B Superfamily | GAPDH-like | 8056136 | 3000043 | SCOP2B (2022-06-29) |
D [auth P] | SCOP2B Superfamily | GAPDH-like | 8056136 | 3000043 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | GAPDH-like | 8056136 | 3000043 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | GAPDH-like | 8056136 | 3000043 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth Q] | Gp_dh_C | e7q54Q2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
A [auth Q] | Gp_dh_N | e7q54Q1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
C [auth O] | Gp_dh_C | e7q54O2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
C [auth O] | Gp_dh_N | e7q54O1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
E [auth A] | Gp_dh_C | e7q54A2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
E [auth A] | Gp_dh_N | e7q54A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
G [auth C] | Gp_dh_C | e7q54C1 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
G [auth C] | Gp_dh_N | e7q54C2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
B [auth R] | Gp_dh_C | e7q54R2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
B [auth R] | Gp_dh_N | e7q54R1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
D [auth P] | Gp_dh_C | e7q54P2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
D [auth P] | Gp_dh_N | e7q54P1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
F [auth B] | Gp_dh_C | e7q54B2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
F [auth B] | Gp_dh_N | e7q54B1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
H [auth D] | Gp_dh_C | e7q54D2 | A: a+b two layers | X: FwdE/GAPDH domain-like | H: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (From Topology) | T: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | F: Gp_dh_C | ECOD (1.6) |
H [auth D] | Gp_dh_N | e7q54D1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: NAD(P)-binding Rossmann-fold domains | F: Gp_dh_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth Q], C [auth O], E [auth A], G [auth C] | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C) | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. | Domain |
A [auth Q], C [auth O], E [auth A], G [auth C] | PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N) | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. | Domain |
B [auth R], D [auth P], F [auth B], H [auth D] | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain (Gp_dh_C) | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. | Domain |
B [auth R], D [auth P], F [auth B], H [auth D] | PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain (Gp_dh_N) | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. | Domain |