7PQD
Cryo-EM structure of the dimeric Rhodobacter sphaeroides RC-LH1 core complex at 2.9 A: the structural basis for dimerisation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
EA [auth M] | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8099400 | 3000736 | SCOP2B (2021-05-27) |
NB [auth m] | SCOP2B Superfamily | Bacterial photosystem II reaction centre L and M subunits | 8099400 | 3000736 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth AB] | PF00556 | e7pqdAB1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
C [auth AC] | PF00556 | e7pqdAC1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
F [auth AF] | PF00556 | e7pqdAF1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
G [auth AG] | PF00556 | e7pqdAG1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
H [auth AH] | PF00556 | e7pqdAH1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
I [auth AI] | PF00556 | e7pqdAI1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
J [auth AJ] | PF00556 | e7pqdAJ1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
JA [auth aa] | PF00556 | e7pqdaa1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
KA [auth ab] | PF00556 | e7pqdab1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
L [auth AL] | PF00556 | e7pqdAL1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
N [auth AN] | PF00556 | e7pqdAN1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
PA [auth ag] | PF00556 | e7pqdag1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
RA [auth ai] | PF00556 | e7pqdai1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
SA [auth aj] | PF00556 | e7pqdaj1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
TA [auth ak] | PF00556 | e7pqdak1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
A [auth AA] | PF00556 | e7pqdAA1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
D [auth AD] | PF00556 | e7pqdAD1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
E [auth AE] | PF00556 | e7pqdAE1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
K [auth AK] | PF00556 | e7pqdAK1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
LA [auth ac] | PF00556 | e7pqdac1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
M [auth AM] | PF00556 | e7pqdAM1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
MA [auth ad] | PF00556 | e7pqdad1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
NA [auth ae] | PF00556 | e7pqdae1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
OA [auth af] | PF00556 | e7pqdaf1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
QA [auth ah] | PF00556 | e7pqdah1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
UA [auth al] | PF00556 | e7pqdal1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
VA [auth am] | PF00556 | e7pqdam1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
WA [auth an] | PF00556 | e7pqdan1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
BA [auth BN] | PF00556 | e7pqdBN1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
BB [auth be] | PF00556 | e7pqdbe1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
CB [auth bf] | PF00556 | e7pqdbf1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
HB [auth bk] | PF00556 | e7pqdbk1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
JB [auth bm] | PF00556 | e7pqdbm1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
KB [auth bn] | PF00556 | e7pqdbn1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
P [auth BB] | PF00556 | e7pqdBB1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
R [auth BD] | PF00556 | e7pqdBD1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
T [auth BF] | PF00556 | e7pqdBF1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
U [auth BG] | PF00556 | e7pqdBG1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
X [auth BJ] | PF00556 | e7pqdBJ1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
XA [auth ba] | PF00556 | e7pqdba1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
AA [auth BM] | PF00556 | e7pqdBM1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
AB [auth bd] | PF00556 | e7pqdbd1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
DB [auth bg] | PF00556 | e7pqdbg1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
EB [auth bh] | PF00556 | e7pqdbh1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
FB [auth bi] | PF00556 | e7pqdbi1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
GB [auth bj] | PF00556 | e7pqdbj1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
IB [auth bl] | PF00556 | e7pqdbl1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
O [auth BA] | PF00556 | e7pqdBA1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
Q [auth BC] | PF00556 | e7pqdBC1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
S [auth BE] | PF00556 | e7pqdBE1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
V [auth BH] | PF00556 | e7pqdBH1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
W [auth BI] | PF00556 | e7pqdBI1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
Y [auth BK] | PF00556 | e7pqdBK1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
YA [auth bb] | PF00556 | e7pqdbb1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
Z [auth BL] | PF00556 | e7pqdBL1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
ZA [auth bc] | PF00556 | e7pqdbc1 | A: extended segments | X: Bacterial light-harvesting complex subunits (From Topology) | H: Bacterial light-harvesting complex subunits (From Topology) | T: Bacterial light-harvesting complex subunits | F: PF00556 | ECOD (1.6) |
CA [auth H] | PF03967,PF05239 | e7pqdH1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PF03967,PF05239 | ECOD (1.6) |
CA [auth H] | PF03967 | e7pqdH2 | A: extended segments | X: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | H: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | T: Photosystem II reaction centre subunit H, transmembrane region | F: PF03967 | ECOD (1.6) |
LB [auth h] | PF03967,PF05239 | e7pqdh1 | A: beta barrels | X: SH3 | H: PRC-barrel domain (From Topology) | T: PRC-barrel domain | F: PF03967,PF05239 | ECOD (1.6) |
LB [auth h] | PF03967 | e7pqdh2 | A: extended segments | X: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | H: Photosystem II reaction centre subunit H, transmembrane region (From Topology) | T: Photosystem II reaction centre subunit H, transmembrane region | F: PF03967 | ECOD (1.6) |
DA [auth L] | PF00124 | e7pqdL1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
MB [auth l] | PF00124 | e7pqdl1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
EA [auth M] | PF00124 | e7pqdM1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
NB [auth m] | PF00124 | e7pqdm1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00124 | ECOD (1.6) |
IA [auth X] | PF11511 | e7pqdX1 | A: extended segments | X: Intrinsic membrane protein pufX (From Topology) | H: Intrinsic membrane protein pufX (From Topology) | T: Intrinsic membrane protein pufX | F: PF11511 | ECOD (1.6) |
RB [auth x] | PF11511 | e7pqdx1 | A: extended segments | X: Intrinsic membrane protein pufX (From Topology) | H: Intrinsic membrane protein pufX (From Topology) | T: Intrinsic membrane protein pufX | F: PF11511 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
EA [auth M], NB [auth m] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
EA [auth M], NB [auth m] | IPR036854 | Photosystem II protein D1/D2 superfamily | Homologous Superfamily |
EA [auth M], NB [auth m] | IPR005781 | Photosynthetic reaction centre, M subunit | Family |
EA [auth M], NB [auth m] | IPR000484 | Photosynthetic reaction centre, L/M | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Bacterial photosystems |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |