7PM9
Cryo-EM structure of the actomyosin-V complex in the strong-ADP state (central 1er, class 4)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | EF-hand | 8032927 | 3001983 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | P-loop motor domain | 8032926 | 3002036 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Myosin s1 fragment, N-terminal domain | 8032925 | 3000319 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040509 | 3000092 | SCOP2B (2022-06-29) |
D [auth C] | SCOP2B Superfamily | Actin-like ATPases | 8040506 | 3000092 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | EF-hand_7_8 | e7pm9B2 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_8 | ECOD (1.6) |
B | EF-hand_7_5 | e7pm9B1 | A: alpha arrays | X: EF-hand | H: EF-hand-related | T: EF-hand | F: EF-hand_7_5 | ECOD (1.6) |
C [auth A] | Myosin_N_1 | e7pm9A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Myosin_N_1 | ECOD (1.6) |
C [auth A] | IQ_1 | e7pm9A3 | A: alpha bundles | X: Myosin VI lever arm (From Topology) | H: Myosin VI lever arm (From Topology) | T: Myosin VI lever arm | F: IQ_1 | ECOD (1.6) |
C [auth A] | Myosin_head | e7pm9A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Myosin_head | ECOD (1.6) |
D [auth C] | Actin_1st | e7pm9C2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_1st | ECOD (1.6) |
D [auth C] | Actin_2nd | e7pm9C1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Actin_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF00612 | IQ calmodulin-binding motif (IQ) | IQ calmodulin-binding motif | - | Motif |
C [auth A] | PF00063 | Myosin head (motor domain) (Myosin_head) | Myosin head (motor domain) | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR050230 | Calcium-Regulated Muscle Contraction and Cellular Process | Family | |
IPR002048 | EF-hand domain | Domain | |
IPR011992 | EF-hand domain pair | Homologous Superfamily | |
C [auth A] | IPR036961 | Kinesin motor domain superfamily | Homologous Superfamily |
C [auth A] | IPR002710 | Dilute domain | Domain |
C [auth A] | IPR000048 | IQ motif, EF-hand binding site | Binding Site |
C [auth A] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
C [auth A] | IPR036103 | Class V myosin, motor domain | Domain |
C [auth A] | IPR037988 | Myosin 5a, cargo-binding domain | Domain |
C [auth A] | IPR001609 | Myosin head, motor domain | Domain |
C [auth A] | IPR004009 | Myosin, N-terminal, SH3-like | Domain |
D [auth C] | IPR020902 | Actin/actin-like conserved site | Conserved Site |
D [auth C] | IPR043129 | ATPase, nucleotide binding domain | Homologous Superfamily |
D [auth C] | IPR004001 | Actin, conserved site | Conserved Site |
D [auth C] | IPR004000 | Actin family | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth H] | DTH | AA0199 :  D-allo-threonine MOD:00863 | : 
A [auth H] | EEP | AA0199 | : 
A [auth H] | HYP | Parent Component: PRO :  AA0199 , AA0030 :  D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039 |
D [auth C] | HIC | Parent Component: HIS :  AA0199 , AA0030 , AA0317 :  D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039 , 1'-methyl-L-histidine MOD:00322 |