7PBU
RuvAB branch migration motor complexed to the Holliday junction - RuvA-HJ core [t2 dataset]
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | RuvA_N | e7pbuA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
A | HHH_5 | e7pbuA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
B | RuvA_N | e7pbuB2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
B | HHH_5 | e7pbuB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
C | RuvA_N | e7pbuC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
C | HHH_5 | e7pbuC2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
D | RuvA_N | e7pbuD1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
D | HHH_5 | e7pbuD2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
F | RuvA_N | e7pbuF2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
F | HHH_5 | e7pbuF1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
H | RuvA_N | e7pbuH2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
H | HHH_5 | e7pbuH1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
J | RuvA_N | e7pbuJ1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
J | HHH_5 | e7pbuJ2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
L | RuvA_N | e7pbuL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: RuvA_N | ECOD (1.6) |
L | HHH_5 | e7pbuL2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01330 | RuvA N terminal domain (RuvA_N) | RuvA N terminal domain | The N terminal domain of RuvA has an OB-fold structure. This domain forms the RuvA tetramer contacts [1]. | Domain | |
PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036267 | RuvA, C-terminal domain superfamily | Homologous Superfamily | |
IPR011114 | Holliday junction DNA helicase RuvA, C-terminal | Domain | |
IPR000085 | Holliday junction branch migration complex subunit RuvA | Family | |
IPR010994 | RuvA domain 2-like | Homologous Superfamily | |
IPR013849 | DNA helicase, Holliday junction RuvA type, domain I, bacterial | Domain | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain |