Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing thymine opposite to lesion)
External Resource: Annotation
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | DNA-glycosylase | 8107826 | 3000905 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | AGOG | e7p0wA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: DNA-glycosylase | F: AGOG | ECOD (1.6) |
Chains | Accession | Name | Description | Comments | Source |
---|
| PF09171 | N-glycosylase/DNA lyase (AGOG) | N-glycosylase/DNA lyase | This domain is predominantly found in the Archaeal protein N-glycosylase/DNA lyase. | Domain |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| DNA (5'-D(*TP*TP*TP*(PED)P*TP*TP*TP*CP*T)-3') | - | - | - |
C [auth I] | DNA (5'-D(*AP*GP*AP*AP*AP*TP*AP*AP*A)-3') | - | - | - |
| N-glycosylase/DNA lyase | | | - |
Protein Modification Annotation
Modified Residue(s) |
---|
Chain | Residue(s) | Description |
---|
| PED | RESID:  AA0494
PSI-MOD :  N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454 |