7OYD

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CB [auth WW]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2021-05-27)
K [auth C]SCOP2B SuperfamilyRibosomal protein L48052829 3001146 SCOP2B (2021-05-27)
K [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052828 3002143 SCOP2B (2021-05-27)
M [auth Cc]SCOP2B SuperfamilyNucleic acid-binding proteins8095265 3000135 SCOP2B (2021-05-27)
P [auth Dd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2021-05-27)
R [auth EE]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052745 3001473 SCOP2B (2021-05-27)
R [auth EE]SCOP2B SuperfamilyNucleic acid-binding proteins8052746 3000135 SCOP2B (2021-05-27)
R [auth EE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052747 3000334 SCOP2B (2021-05-27)
S [auth Ee]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2021-05-27)
U [auth FF]SCOP2B SuperfamilyRibosomal protein S78066001 3000799 SCOP2B (2021-05-27)
AA [auth I]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2021-05-27)
BA [auth II]SCOP2B Superfamily50S Ribosomal protein L14-like8053075 3000433 SCOP2B (2021-05-27)
CA [auth J]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2021-05-27)
FA [auth KK]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2021-05-27)
HA [auth LL]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2021-05-27)
HA [auth LL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2021-05-27)
JA [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2021-05-27)
KA [auth NN]SCOP2B SuperfamilyHomeodomain-like8052970 3000001 SCOP2B (2021-05-27)
KA [auth NN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052971 3001284 SCOP2B (2021-05-27)
QA [auth QQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2021-05-27)
UA [auth SS]SCOP2B SuperfamilyS13-like H2TH domain8101439 3000053 SCOP2B (2021-05-27)
WA [auth TT]SCOP2B SuperfamilyWinged helix DNA-binding domain8089322 3000034 SCOP2B (2021-05-27)
YA [auth UU]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2021-05-27)
ZA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like8072048 3000433 SCOP2B (2021-05-27)
FB [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076754 3000334 SCOP2B (2021-05-27)
F [auth AA]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097826 3001397 SCOP2B (2021-05-27)
HB [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053047 3000334 SCOP2B (2021-05-27)
IB [auth ZZ]SCOP2B SuperfamilyWinged helix DNA-binding domain8090991 3000034 SCOP2B (2021-05-27)
JB [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2021-05-27)
LB [auth c]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2021-05-27)
NB [auth e]SCOP2B SuperfamilyRibosomal protein L32e8102088 3000982 SCOP2B (2021-05-27)
OB [auth f]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2021-05-27)
RB [auth i]SCOP2B SuperfamilyRibosomal protein L36e8053119 3002161 SCOP2B (2021-05-27)
TB [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like8093716 3002206 SCOP2B (2021-05-27)
UB [auth l]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2021-05-27)
YB [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8101435 3001320 SCOP2B (2021-05-27)
H [auth B]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2021-05-27)
I [auth BB]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
O [auth DD]PF00189e7oydDD2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
O [auth DD]PF07650e7oydDD1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
V [auth G]PF01248e7oydG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
CB [auth WW]PF00410e7oydWW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
CB [auth WW]PF00410e7oydWW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
A [auth x]PF00687e7oydx2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
A [auth x]PF00687e7oydx1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
J [auth Bb]PF01667e7oydBb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
K [auth C]PF00573e7oydC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
K [auth C]PF14374e7oydC2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
L [auth CC]PF03719e7oydCC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
L [auth CC]PF00333e7oydCC2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
L [auth CC]PF00333e7oydCC3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
M [auth Cc]PF01200e7oydCc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
N [auth D]PF14204,PF17144e7oydD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
P [auth Dd]PF00253e7oydDd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
Q [auth E]PF01159,PF03868e7oydE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
R [auth EE]PF00900e7oydEE2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
R [auth EE]PF00467,PF16121e7oydEE3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
R [auth EE]PF00900,PF01479,PF08071e7oydEE1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
S [auth Ee]PF04758e7oydEe1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
T [auth F]PF00327,PF08079e7oydF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
U [auth FF]PF00177e7oydFF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
W [auth GG]PF01092e7oydGG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
X [auth Gg]PF00400e7oydGg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
Y [auth H]PF00347e7oydH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
Z [auth HH]PF01251e7oydHH2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
AA [auth I]PF00252e7oydI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
BA [auth II]PF01201e7oydII1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
CA [auth J]PF00281,PF00673e7oydJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
DA [auth JJ]PF00163,PF01479e7oydJJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
FA [auth KK]PF03501e7oydKK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
GA [auth L]PF01294e7oydL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
HA [auth LL]PF00366,PF16205e7oydLL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
IA [auth M]PF00467,PF01929e7oydM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
JA [auth N]PF00827e7oydN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
KA [auth NN]PF08069e7oydNN1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
KA [auth NN]PF00312e7oydNN2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
LA [auth O]PF00572e7oydO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
MA [auth OO]PF00411e7oydOO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
NA [auth P]PF00237e7oydP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
OA [auth PP]PF00203e7oydPP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
PA [auth Q]PF17135e7oydQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
QA [auth QQ]PF00380e7oydQQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
RA [auth R]PF01280e7oydR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
RA [auth R]PF01280e7oydR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
SA [auth RR]PF00833e7oydRR1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
TA [auth S]F_UNCLASSIFIEDe7oydS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
TA [auth S]PF01775e7oydS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
UA [auth SS]PF00416e7oydSS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
VA [auth T]PF01157e7oydT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
WA [auth TT]PF01090e7oydTT1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
E [auth A]PF00181e7oydA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
E [auth A]PF03947e7oydA1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
XA [auth U]PF01776e7oydU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
YA [auth UU]PF00338e7oydUU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
ZA [auth V]PF00238e7oydV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
AB [auth VV]PF01249e7oydVV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
BB [auth W]PF01246e7oydW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
DB [auth X]PF00276,PF03939e7oydX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
EB [auth XX]PF00164e7oydXX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
FB [auth Y]PF16906e7oydY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
GB [auth YY]PF01282e7oydYY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
F [auth AA]PF00318e7oydAA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
HB [auth Z]PF00467,PF01777e7oydZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
IB [auth ZZ]PF03297e7oydZZ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
JB [auth a]PF00828e7oyda1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
KB [auth b]PF01779e7oydb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
LB [auth c]PF01248e7oydc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
MB [auth d]PF01198e7oydd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
NB [auth e]PF01655e7oyde1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
OB [auth f]PF01247e7oydf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
PB [auth g]PF01199e7oydg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
QB [auth h]PF00831e7oydh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
G [auth Aa]PF01283e7oydAa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
RB [auth i]PF01158e7oydi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
SB [auth j]PF01907e7oydj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
TB [auth k]PF01781e7oydk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
UB [auth l]PF00832e7oydl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
VB [auth m]PF01020e7oydm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
WB [auth n]PF05162e7oydn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
XB [auth o]PF00935e7oydo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
YB [auth p]PF01780e7oydp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
ZB [auth r]PF01778e7oydr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
AC [auth s]PF00466e7oyds1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
AC [auth s]PF17777e7oyds2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
H [auth B]PF00297e7oydB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
CC [auth t]PF01287e7oydt1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01287ECOD (1.6)
CC [auth t]PF21485e7oydt2 A: beta barrelsX: SH3H: SH3T: SH3F: PF21485ECOD (1.6)
DC [auth v]F_UNCLASSIFIEDe7oydv4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
DC [auth v]PF03764e7oydv2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
DC [auth v]PF00679e7oydv3 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
DC [auth v]PF14492e7oydv5 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
DC [auth v]PF00009e7oydv1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
I [auth BB]PF01015e7oydBB1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
I [auth BB]PF01015e7oydBB2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
O [auth DD]PF07650KH domain (KH_2)KH domain- Domain
O [auth DD]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
O [auth DD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
CB [auth WW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
K [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
K [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
L [auth CC]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
N [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
Q [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
Q [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
R [auth EE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
R [auth EE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
R [auth EE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
R [auth EE]PF00467KOW motif (KOW)KOW motif- Family
T [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
T [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
T [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
U [auth FF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
W [auth GG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
W [auth GG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
Y [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
AA [auth I]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
AA [auth I]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
BA [auth II]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
CA [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
CA [auth J]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
CA [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
DA [auth JJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
DA [auth JJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
EA [auth K]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
FA [auth KK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
GA [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
GA [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
HA [auth LL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
HA [auth LL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
IA [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
JA [auth N]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
JA [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
KA [auth NN]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
KA [auth NN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
LA [auth O]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
NA [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
NA [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
OA [auth PP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
QA [auth QQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
RA [auth R]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
RA [auth R]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
UA [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
VA [auth T]PF21485Translation initiation factor 5A-like, N-terminal (IF5A-like_N)Translation initiation factor 5A-like, N-terminalThis is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation betwe ...This is the N-terminal domain of Translation initiation factor 5A from eukaryotes and archaea, which has a SH2-like fold. These proteins are involved in translation elongation and eIF5A is specifically required to promote peptide-bond formation between consecutive proline residues [1-5]. This entry also includes Woronin body major protein Hex1, which is similar to eIF5A.
Domain
VA [auth T]PF01287Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold (eIF-5a)Eukaryotic elongation factor 5A hypusine, DNA-binding OB foldeIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast [1].Domain
WA [auth TT]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
E [auth A]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
YA [auth UU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
ZA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
BB [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
EB [auth XX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
FB [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
FB [auth Y]PF00467KOW motif (KOW)KOW motif- Family
GB [auth YY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
F [auth AA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
F [auth AA]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
HB [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
HB [auth Z]PF00467KOW motif (KOW)KOW motif- Family
H [auth B]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
I [auth BB]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
O [auth DD]Ribosomal protein S3
V [auth G]60S ribosomal protein L7a---
CB [auth WW]Ribosomal protein S15a
A [auth x]Ribosomal protein uL1
J [auth Bb]40S ribosomal protein S27
K [auth C]60S ribosomal protein L4
L [auth CC]40S ribosomal protein S2---
M [auth Cc]40S ribosomal protein S28
N [auth D]60S ribosomal protein L5
P [auth Dd]40S ribosomal protein S29
Q [auth E]60S ribosomal protein L6
R [auth EE]40S ribosomal protein S4
S [auth Ee]40S ribosomal protein S30
B [auth 5]28S rRNA---
T [auth F]60S ribosomal protein L7
U [auth FF]Ribosomal protein S5
W [auth GG]40S ribosomal protein S6
X [auth Gg]RACK1
Y [auth H]60S ribosomal protein L9
Z [auth HH]40S ribosomal protein S7
AA [auth I]60S ribosomal protein L10
BA [auth II]40S ribosomal protein S8
CA [auth J]60S ribosomal protein L11
C [auth 8]5.8S rRNA---
DA [auth JJ]40S ribosomal protein S9
EA [auth K]5S rRNA---
FA [auth KK]S10_plectin domain-containing protein -
GA [auth L]60S ribosomal protein L13
HA [auth LL]40S ribosomal protein S11
IA [auth M]60S ribosomal protein L14
JA [auth N]Ribosomal protein L15
KA [auth NN]40S ribosomal protein S13
LA [auth O]60S ribosomal protein L13a---
MA [auth OO]40S ribosomal protein S14-like---
D [auth 9]18S rRNA---
NA [auth P]60S ribosomal protein L17
OA [auth PP]40S ribosomal protein uS19
PA [auth Q]Ribosomal protein L18---
QA [auth QQ]Ribosomal protein S16
RA [auth R]Ribosomal protein L19
SA [auth RR]40S ribosomal protein eS17
TA [auth S]60S ribosomal protein L18a---
UA [auth SS]40S ribosomal protein uS13
VA [auth T]60S ribosomal protein L21
WA [auth TT]40S ribosomal protein S19
E [auth A]60S ribosomal protein L8---
XA [auth U]60S ribosomal protein L22-like---
YA [auth UU]40S ribosomal protein uS10
ZA [auth V]Ribosomal protein L23
AB [auth VV]40S ribosomal protein S21---
BB [auth W]Ribosomal protein L24
DB [auth X]60S ribosomal protein L23a---
EB [auth XX]40S ribosomal protein S23
FB [auth Y]Ribosomal protein L26
GB [auth YY]40S ribosomal protein S24
F [auth AA]40S ribosomal protein SA
HB [auth Z]60S ribosomal protein L27
IB [auth ZZ]40S ribosomal protein S25
JB [auth a]60S ribosomal protein L27a
KB [auth b]60S ribosomal protein L29
LB [auth c]60S ribosomal protein L30
MB [auth d]60S ribosomal protein L31
NB [auth e]60S ribosomal protein L32
OB [auth f]60S ribosomal protein L35a
PB [auth g]60S ribosomal protein L34
QB [auth h]60S ribosomal protein L35
G [auth Aa]40S ribosomal protein S26-like---
RB [auth i]60S ribosomal protein L36
SB [auth j]Ribosomal protein L37
TB [auth k]60S ribosomal protein L38
UB [auth l]60S ribosomal protein L39-like
VB [auth m]Ubiquitin-60S ribosomal protein L40---
WB [auth n]60s ribosomal protein l41
XB [auth o]60S ribosomal protein L36a-like
YB [auth p]60S ribosomal protein L37a
ZB [auth r]60S ribosomal protein L28
AC [auth s]60S ribosomal protein L10E---
H [auth B]Ribosomal protein L3
BC [auth s1]Dap1b -
CC [auth t]Eukaryotic translation initiation factor 5A-1
DC [auth v]Elongation factor 2---
EC [auth w]SERPINE1 mRNA binding protein 1
I [auth BB]40S ribosomal protein S3a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
O [auth DD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
O [auth DD]IPR004044K Homology domain, type 2Domain
O [auth DD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
O [auth DD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
O [auth DD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
O [auth DD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
O [auth DD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CB [auth WW]IPR000630Small ribosomal subunit protein uS8Family
CB [auth WW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
CB [auth WW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
A [auth x]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
A [auth x]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
A [auth x]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
A [auth x]IPR002143Large ribosomal subunit protein uL1Family
A [auth x]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
J [auth Bb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
J [auth Bb]IPR000592Small ribosomal subunit protein eS27Family
J [auth Bb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
K [auth C]IPR002136Large ribosomal subunit protein uL4Family
K [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
K [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
K [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
M [auth Cc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
M [auth Cc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth Cc]IPR000289Small ribosomal subunit protein eS28Family
N [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
N [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
P [auth Dd]IPR001209Small ribosomal subunit protein uS14Family
P [auth Dd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
P [auth Dd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
P [auth Dd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Q [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
Q [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
Q [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
Q [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth E]IPR000915Large ribosomal subunit protein eL6Family
R [auth EE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
R [auth EE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
R [auth EE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
R [auth EE]IPR002942RNA-binding S4 domainDomain
R [auth EE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
R [auth EE]IPR000876Small ribosomal subunit protein eS4Family
R [auth EE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth EE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
R [auth EE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
R [auth EE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
R [auth EE]IPR005824KOWDomain
S [auth Ee]IPR039415Ubiquitin-like protein FUBIDomain
S [auth Ee]IPR019956Ubiquitin domainDomain
S [auth Ee]IPR019954Ubiquitin conserved siteConserved Site
S [auth Ee]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
S [auth Ee]IPR000626Ubiquitin-like domainDomain
S [auth Ee]IPR006846Small ribosomal subunit protein eS30Family
T [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
T [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
T [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
T [auth F]IPR039699Large ribosomal subunit protein uL30Family
T [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
T [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
T [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
U [auth FF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth FF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth FF]IPR000235Small ribosomal subunit protein uS7Family
U [auth FF]IPR023798Small ribosomal subunit protein uS7 domainDomain
U [auth FF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
W [auth GG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
W [auth GG]IPR001377Small ribosomal subunit protein eS6Family
W [auth GG]IPR014401Small ribosomal subunit protein eS6-likeFamily
X [auth Gg]IPR019775WD40 repeat, conserved siteConserved Site
X [auth Gg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
X [auth Gg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
X [auth Gg]IPR001680WD40 repeatRepeat
X [auth Gg]IPR020472G-protein beta WD-40 repeatRepeat
X [auth Gg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
Y [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
Y [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
Y [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
Z [auth HH]IPR000554Small ribosomal subunit protein eS7Family
Z [auth HH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
AA [auth I]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
AA [auth I]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
AA [auth I]IPR016180Large ribosomal subunit protein uL16 domainDomain
AA [auth I]IPR047873Large ribosomal subunit protein uL16Family
AA [auth I]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
BA [auth II]IPR001047Small ribosomal subunit protein eS8Family
BA [auth II]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
BA [auth II]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
BA [auth II]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
CA [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
CA [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
CA [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
CA [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
CA [auth J]IPR002132Large ribosomal subunit protein uL5Family
DA [auth JJ]IPR002942RNA-binding S4 domainDomain
DA [auth JJ]IPR022801Small ribosomal subunit protein uS4Family
DA [auth JJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
DA [auth JJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
DA [auth JJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
DA [auth JJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
FA [auth KK]IPR037447Small ribosomal subunit protein eS10Family
FA [auth KK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
FA [auth KK]IPR005326Plectin/eS10, N-terminalDomain
GA [auth L]IPR001380Large ribosomal subunit protein eL13Family
HA [auth LL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
HA [auth LL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth LL]IPR000266Small ribosomal subunit protein uS17Family
HA [auth LL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
HA [auth LL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
IA [auth M]IPR039660Large ribosomal subunit protein eL14Family
IA [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
IA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IA [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
IA [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JA [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
JA [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
JA [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
JA [auth N]IPR000439Large ribosomal subunit protein eL15Family
KA [auth NN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
KA [auth NN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
KA [auth NN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
KA [auth NN]IPR000589Small ribosomal subunit protein uS15Family
NA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
NA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
NA [auth P]IPR001063Large ribosomal subunit protein uL22Family
NA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
OA [auth PP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
OA [auth PP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
OA [auth PP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
OA [auth PP]IPR002222Small ribosomal subunit protein uS19Family
QA [auth QQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
QA [auth QQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
QA [auth QQ]IPR000754Small ribosomal subunit protein uS9Family
QA [auth QQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
RA [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
RA [auth R]IPR039547Large ribosomal subunit protein eL19Family
RA [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
RA [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
RA [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
RA [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
SA [auth RR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
SA [auth RR]IPR001210Small ribosomal subunit protein eS17Family
SA [auth RR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
UA [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
UA [auth SS]IPR001892Small ribosomal subunit protein uS13Family
UA [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
UA [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
VA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
VA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
VA [auth T]IPR001147Large ribosomal subunit protein eL21Family
VA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WA [auth TT]IPR001266Small ribosomal subunit protein eS19Family
WA [auth TT]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
WA [auth TT]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
WA [auth TT]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
YA [auth UU]IPR001848Small ribosomal subunit protein uS10Family
YA [auth UU]IPR027486Small ribosomal subunit protein uS10 domainDomain
YA [auth UU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
YA [auth UU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
YA [auth UU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
ZA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
ZA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
ZA [auth V]IPR000218Large ribosomal subunit protein uL14Family
BB [auth W]IPR011017TRASH domainDomain
BB [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
BB [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
BB [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
EB [auth XX]IPR006032Small ribosomal subunit protein uS12Family
EB [auth XX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EB [auth XX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
FB [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FB [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FB [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
FB [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FB [auth Y]IPR005824KOWDomain
FB [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
GB [auth YY]IPR001976Small ribosomal subunit protein eS24Family
GB [auth YY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
GB [auth YY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
F [auth AA]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
F [auth AA]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
F [auth AA]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
F [auth AA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
F [auth AA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
F [auth AA]IPR001865Small ribosomal subunit protein uS2Family
F [auth AA]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
HB [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
HB [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HB [auth Z]IPR001141Large ribosomal subunit protein eL27Family
HB [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
HB [auth Z]IPR005824KOWDomain
HB [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
IB [auth ZZ]IPR004977Small ribosomal subunit protein eS25Family
IB [auth ZZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
JB [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
JB [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
JB [auth a]IPR030878Large ribosomal subunit protein uL15Family
JB [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
JB [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KB [auth b]IPR002673Large ribosomal subunit protein eL29Family
LB [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
LB [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
LB [auth c]IPR000231Large ribosomal subunit protein eL30Family
LB [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
LB [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
MB [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
MB [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
MB [auth d]IPR000054Large ribosomal subunit protein eL31Family
NB [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
NB [auth e]IPR001515Large ribosomal subunit protein eL32Family
NB [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
OB [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
OB [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
OB [auth f]IPR001780Large ribosomal subunit protein eL33Family
OB [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
PB [auth g]IPR008195Large ribosomal subunit protein eL34Family
PB [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
QB [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
QB [auth h]IPR001854Large ribosomal subunit protein uL29Family
QB [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
QB [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
RB [auth i]IPR000509Large ribosomal subunit protein eL36Family
RB [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
SB [auth j]IPR001569Large ribosomal subunit protein eL37Family
SB [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
SB [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SB [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
TB [auth k]IPR002675Large ribosomal subunit protein eL38Family
TB [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
UB [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
UB [auth l]IPR000077Large ribosomal subunit protein eL39Family
UB [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
WB [auth n]IPR007836Large ribosomal subunit protein eS32Family
XB [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
XB [auth o]IPR000552Large ribosomal subunit protein eL42Family
YB [auth p]IPR002674Large ribosomal subunit protein eL43Family
YB [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
YB [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
ZB [auth r]IPR029004Ribosomal eL28/Mak16Domain
ZB [auth r]IPR002672Large ribosomal subunit protein eL28Family
H [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
H [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
H [auth B]IPR000597Large ribosomal subunit protein uL3Family
BC [auth s1]IPR024130DAP1/DAPL1Family
CC [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CC [auth t]IPR020189Translation elongation factor, IF5A C-terminalDomain
CC [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CC [auth t]IPR019769Translation elongation factor, IF5A, hypusine sitePTM
CC [auth t]IPR001884Translation elongation factor IF5A-likeFamily
CC [auth t]IPR048670Translation initiation factor 5A-like, N-terminalDomain
CC [auth t]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EC [auth w]IPR039764RNA binding protein HABP4/SERBP1-likeFamily
EC [auth w]IPR006861Hyaluronan/mRNA-binding proteinDomain
EC [auth w]IPR032381Intracellular hyaluronan-binding protein 4, N-terminal domainDomain
I [auth BB]IPR001593Small ribosomal subunit protein eS1Family
I [auth BB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
I [auth BB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
K [auth C]MLZ Parent Component: LYS

RESIDAA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085
B [auth 5]1MA Parent Component: A

RESIDAA0076

B [auth 5]2MG Parent Component: G

RESIDAA0076

B [auth 5]5MC Parent Component: C

RESIDAA0076

B [auth 5]5MU Parent Component: U

RESIDAA0076

B [auth 5]6MZ Parent Component: A

RESIDAA0076

B [auth 5]7MG Parent Component: G

RESIDAA0076

B [auth 5]A2M Parent Component: A

RESIDAA0076

B [auth 5]B8H Parent Component: U

RESIDAA0076

B [auth 5]B8K Parent Component: G

RESIDAA0076

B [auth 5]B8Q Parent Component: C

B [auth 5]B8T Parent Component: C

RESIDAA0076

B [auth 5]B8W Parent Component: G

RESIDAA0076

B [auth 5]B9B Parent Component: G

RESIDAA0076

B [auth 5]B9H Parent Component: C

B [auth 5]BGH Parent Component: G

RESIDAA0076

B [auth 5]E6G Parent Component: G

RESIDAA0076

B [auth 5]E7G Parent Component: G

RESIDAA0076

B [auth 5]I4U Parent Component: U

RESIDAA0076

B [auth 5]M7A Parent Component: A

RESIDAA0076

B [auth 5]MHG Parent Component: G

RESIDAA0076

B [auth 5]OMC Parent Component: C

RESIDAA0076

B [auth 5]OMG Parent Component: G

RESIDAA0076

B [auth 5]OMU Parent Component: U

RESIDAA0076

B [auth 5]P4U Parent Component: U

RESIDAA0076

B [auth 5]P7G Parent Component: G

RESIDAA0076

B [auth 5]PSU Parent Component: U

RESIDAA0076

B [auth 5]UR3 Parent Component: U

RESIDAA0076

C [auth 8]OMU Parent Component: U

RESIDAA0076

D [auth 9]4AC RESIDAA0076

D [auth 9]5MC Parent Component: C

RESIDAA0076

D [auth 9]5MU Parent Component: U

RESIDAA0076

D [auth 9]6MZ Parent Component: A

RESIDAA0076

D [auth 9]A2M Parent Component: A

RESIDAA0076

D [auth 9]B8N RESIDAA0076

D [auth 9]B8Q Parent Component: C

D [auth 9]E3C Parent Component: C

D [auth 9]M7A Parent Component: A

RESIDAA0076

D [auth 9]MA6 Parent Component: A

RESIDAA0076

D [auth 9]OMC Parent Component: C

RESIDAA0076

D [auth 9]OMG Parent Component: G

RESIDAA0076

D [auth 9]OMU Parent Component: U

RESIDAA0076

D [auth 9]PSU Parent Component: U

RESIDAA0076

D [auth 9]UR3 Parent Component: U

RESIDAA0076

VB [auth m]MLZ Parent Component: LYS

RESIDAA0076 , AA0076

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085
CC [auth t]5CT Parent Component: LYS

RESIDAA0076 , AA0076

DC [auth v]DDE Parent Component: HIS

RESIDAA0076 , AA0076 , AA0040

PSI-MOD :  N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 , 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049