7OCE

Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and CNIH2 (LBD-TMD)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8036483 3000083 SCOP2B (2022-06-29)
D [auth I]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)
F [auth J]SCOP2B SuperfamilyClaudin-like 8094098 3002606 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALig_chane7oceA1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
ASBP_bac_3_1ste7oceA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
G [auth C]Lig_chane7oceC2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
G [auth C]SBP_bac_3_1ste7oceC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
E [auth D]Lig_chane7oceD1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
E [auth D]SBP_bac_3_1ste7oceD2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
BLig_chane7oceB2 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: Lig_chanECOD (1.6)
BSBP_bac_3_1ste7oceB1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: SBP_bac_3_1stECOD (1.6)
D [auth I]PMP22_Claudine7oceI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)
F [auth J]PMP22_Claudine7oceJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PMP22_ClaudinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
G [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
A,
G [auth C]		PF10613Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd)Ligated ion channel L-glutamate- and glycine-binding siteThis region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ...This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF00060.
Domain
B,
E [auth D]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
C [auth G],
H [auth E]		PF03311Cornichon protein (Cornichon)Cornichon protein- Family
D [auth I],
F [auth J]		PF00822PMP-22/EMP/MP20/Claudin family (PMP22_Claudin)PMP-22/EMP/MP20/Claudin family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
G [auth C]		Glutamate receptor 1
B,
E [auth D]		Glutamate receptor 2
C [auth G],
H [auth E]		Protein cornichon homolog 2-
D [auth I],
F [auth J]		Voltage-dependent calcium channel gamma-8 subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
G [auth C]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
A,
G [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
G [auth C]		IPR001828Receptor, ligand binding regionDomain
A,
G [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
G [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
G [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
G [auth C]		IPR015683Ionotropic glutamate receptorFamily
B,
E [auth D]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
B,
E [auth D]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
B,
E [auth D]		IPR001508Ionotropic glutamate receptor, metazoaFamily
B,
E [auth D]		IPR001828Receptor, ligand binding regionDomain
B,
E [auth D]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
B,
E [auth D]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B,
E [auth D]		IPR015683Ionotropic glutamate receptorFamily
C [auth G],
H [auth E]		IPR033466Cornichon, conserved siteConserved Site
C [auth G],
H [auth E]		IPR003377CornichonFamily
D [auth I],
F [auth J]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
D [auth I],
F [auth J]		IPR051072Voltage-dependent calcium channel gamma subunitFamily
D [auth I],
F [auth J]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
D [auth I],
F [auth J]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

ChainsExternal LinkComment
MemProtMDAnnotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA1/A2 Glutamate receptor (AMPA-subtype) in complex with TARP-γ8 and CNIH2 (LBD-TMD), resting state