7OCE
Resting state GluA1/A2 AMPA receptor in complex with TARP gamma 8 and CNIH2 (LBD-TMD)
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth D] | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Type 2 solute binding protein-like | 8036483 | 3000083 | SCOP2B (2022-06-29) |
D [auth I] | SCOP2B Superfamily | Claudin-like | 8094098 | 3002606 | SCOP2B (2022-06-29) |
F [auth J] | SCOP2B Superfamily | Claudin-like | 8094098 | 3002606 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Lig_chan | e7oceA1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
A | SBP_bac_3_1st | e7oceA2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
G [auth C] | Lig_chan | e7oceC2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
G [auth C] | SBP_bac_3_1st | e7oceC1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
E [auth D] | Lig_chan | e7oceD1 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
E [auth D] | SBP_bac_3_1st | e7oceD2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
B | Lig_chan | e7oceB2 | A: alpha complex topology | X: Voltage-gated ion channels (From Topology) | H: Voltage-gated ion channels (From Topology) | T: Voltage-gated ion channels | F: Lig_chan | ECOD (1.6) |
B | SBP_bac_3_1st | e7oceB1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
D [auth I] | PMP22_Claudin | e7oceI1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PMP22_Claudin | ECOD (1.6) |
F [auth J] | PMP22_Claudin | e7oceJ1 | A: alpha bundles | X: Bromodomain-like | H: Claudin (From Topology) | T: Claudin | F: PMP22_Claudin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, G [auth C] | PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family |
A, G [auth C] | PF10613 | Ligated ion channel L-glutamate- and glycine-binding site (Lig_chan-Glu_bd) | Ligated ion channel L-glutamate- and glycine-binding site | This region, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and it binds L-glutamate and glycine [2]. It is found in association with Lig_chan, Pfam:PF ... | Domain |
B, E [auth D] | PF00060 | Ligand-gated ion channel (Lig_chan) | Ligand-gated ion channel | - | Family |
C [auth G], H [auth E] | PF03311 | Cornichon protein (Cornichon) | Cornichon protein | - | Family |
D [auth I], F [auth J] | PF00822 | PMP-22/EMP/MP20/Claudin family (PMP22_Claudin) | PMP-22/EMP/MP20/Claudin family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Ion channel (VIC) superfamily | Glutamate-gated Ion Channel (GIC) family |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |