7OCD

Resting state GluA1/A2 heterotetramer in complex with auxiliary subunit TARP gamma 8 (LBD-TMD)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2021-05-27)
C [auth D]SCOP2B SuperfamilyType 2 solute binding protein-like8036483 3000083 SCOP2B (2021-05-27)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00060e7ocdA1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
APF10613e7ocdA2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
B [auth C]PF00060e7ocdC1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
B [auth C]PF10613e7ocdC2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
F [auth B]PF00060e7ocdB1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
F [auth B]PF10613e7ocdB2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
C [auth D]PF00060e7ocdD1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: PF00060ECOD (1.6)
C [auth D]PF10613e7ocdD2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF10613ECOD (1.6)
D [auth I]PF00822e7ocdI1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PF00822ECOD (1.6)
E [auth J]PF00822e7ocdJ1 A: alpha bundlesX: Bromodomain-likeH: Claudin (From Topology)T: ClaudinF: PF00822ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B [auth C]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family
C [auth D],
F [auth B]		PF00060Ligand-gated ion channel (Lig_chan)Ligand-gated ion channel- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
B [auth C]		Isoform Flip of Glutamate receptor 1
C [auth D],
F [auth B]		Glutamate receptor 2
D [auth I],
E [auth J]		Voltage-dependent calcium channel gamma-8 subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
B [auth C]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
A,
B [auth C]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
A,
B [auth C]		IPR001828Receptor, ligand binding regionDomain
A,
B [auth C]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
A,
B [auth C]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
A,
B [auth C]		IPR001508Ionotropic glutamate receptor, metazoaFamily
A,
B [auth C]		IPR015683Ionotropic glutamate receptorFamily
C [auth D],
F [auth B]		IPR001638Solute-binding protein family 3/N-terminal domain of MltFDomain
C [auth D],
F [auth B]		IPR028082Periplasmic binding protein-like IHomologous Superfamily
C [auth D],
F [auth B]		IPR001508Ionotropic glutamate receptor, metazoaFamily
C [auth D],
F [auth B]		IPR001828Receptor, ligand binding regionDomain
C [auth D],
F [auth B]		IPR001320Ionotropic glutamate receptor, C-terminalDomain
C [auth D],
F [auth B]		IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
C [auth D],
F [auth B]		IPR015683Ionotropic glutamate receptorFamily
D [auth I],
E [auth J]		IPR008372Voltage-dependent calcium channel, gamma-8 subunitFamily
D [auth I],
E [auth J]		IPR004031PMP-22/EMP/MP20/ClaudinFamily
D [auth I],
E [auth J]		IPR008368Voltage-dependent calcium channel, gamma subunitFamily

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicIon channel (VIC) superfamilyGlutamate-gated Ion Channel (GIC) family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALChannels: Other Ion ChannelsGluA1/A2 Glutamate receptor (AMPA-subtype) in complex with TARP-γ8 and CNIH2 (LBD-TMD), resting state