7MUV

Reconstruction of the Legionella pneumophila Dot/Icm T4SS 3DVA Map 3


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth GK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
AD [auth MK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
AG [auth DK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
C [auth EK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
MA [auth HK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
MB [auth JK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
N [auth FK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
NC [auth LK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
OF [auth CK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
VC [auth AK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
WE [auth BK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
ZA [auth IK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
ZB [auth KK]SCOP2B SuperfamilyOmpA-like 8098176 3001650 SCOP2B (2022-06-29)
AB [auth IL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
AC [auth KL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
BD [auth ML]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
BG [auth DL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
CA [auth GL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
D [auth EL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
NA [auth HL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
NB [auth JL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
O [auth FL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
OC [auth LL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
PF [auth CL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XD [auth AL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)
XE [auth BL]SCOP2B SuperfamilyOmpA-like 8074167 3001650 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AG]TrbIe7muvAG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
BA [auth BG]TrbIe7muvBG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
CB [auth CG]TrbIe7muvCG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
DC [auth DG]TrbIe7muvDG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
ED [auth EG]TrbIe7muvEG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
EG [auth HG]TrbIe7muvHG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FE [auth FG]TrbIe7muvFG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
FG [auth IG]TrbIe7muvIG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GF [auth GG]TrbIe7muvGG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
GG [auth JG]TrbIe7muvJG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
HG [auth KG]TrbIe7muvKG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
IG [auth LG]TrbIe7muvLG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
JG [auth MG]TrbIe7muvMG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
KG [auth NG]TrbIe7muvNG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
LG [auth OG]TrbIe7muvOG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
MG [auth PG]TrbIe7muvPG1 A: beta barrelsX: CBF-likeH: TraF (From Topology)T: TraFF: TrbIECOD (1.6)
AA [auth GK]OmpAe7muvGK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
AD [auth MK]OmpAe7muvMK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
AG [auth DK]OmpAe7muvDK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
C [auth EK]OmpAe7muvEK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
MA [auth HK]OmpAe7muvHK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
MB [auth JK]OmpAe7muvJK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
N [auth FK]OmpAe7muvFK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
NC [auth LK]OmpAe7muvLK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OF [auth CK]OmpAe7muvCK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
VC [auth AK]OmpAe7muvAK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
WE [auth BK]OmpAe7muvBK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
ZA [auth IK]OmpAe7muvIK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
ZB [auth KK]OmpAe7muvKK1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
AB [auth IL]OmpAe7muvIL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
AC [auth KL]OmpAe7muvKL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
BD [auth ML]OmpAe7muvML1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
BG [auth DL]OmpAe7muvDL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
CA [auth GL]OmpAe7muvGL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
D [auth EL]OmpAe7muvEL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
NA [auth HL]OmpAe7muvHL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
NB [auth JL]OmpAe7muvJL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
O [auth FL]OmpAe7muvFL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
OC [auth LL]OmpAe7muvLL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
PF [auth CL]OmpAe7muvCL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XD [auth AL]OmpAe7muvAL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)
XE [auth BL]OmpAe7muvBL1 A: a+b three layersX: Bacillus chorismate mutase-likeH: OmpA-like (From Topology)T: OmpA-likeF: OmpAECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03743Bacterial conjugation TrbI-like protein (TrbI)Bacterial conjugation TrbI-like protein- Family
PF16932Type IV secretory system, conjugal DNA-protein transfer (T4SS_TraI)Type IV secretory system, conjugal DNA-protein transfer- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF00691OmpA family (OmpA)OmpA family- Family
PF16816DotD protein (DotD)DotD proteinThe DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
IcmE protein- -
DotC- - -
DUF2807 domain-containing protein---
Type IV secretion protein IcmK---
Inner membrane lipoprotein YiaD- -
Outer membrane protein, OmpA family protein- -
Neurogenic locus notch---
Unknown protein fragment---
Unknown protein fragment---
DotD- - -
DotF- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR053285Thylakoid lumenal pentapeptide repeat proteinFamily
IPR042217Type IV secretion system, VirB10/TrbIHomologous Superfamily
IPR049855DotG/IcmE-like, C-terminal domainDomain
IPR001646Pentapeptide repeatRepeat
IPR005498Type IV secretion system, VirB10/TraB/TrbIFamily
IPR031618Putative type IV secretory system proteinFamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR006665OmpA-like domainDomain
IPR050330Bacterial Outer Membrane Structural/FunctionalFamily
IPR036737OmpA-like domain superfamilyHomologous Superfamily
IPR038140DotD superfamilyHomologous Superfamily
IPR031817DotD proteinFamily