7MTW | pdb_00007mtw

Structure of the adeno-associated virus 9 capsid at pH 4.0

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth u]	zf-C3HC4	e7mtwu1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
Z	zf-C3HC4	e7mtwZ1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
YA [auth t]	zf-C3HC4	e7mtwt1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
Y	zf-C3HC4	e7mtwY1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
XA [auth s]	zf-C3HC4	e7mtws1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
X	zf-C3HC4	e7mtwX1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
WA [auth r]	zf-C3HC4	e7mtwr1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
W	zf-C3HC4	e7mtwW1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
VA [auth q]	zf-C3HC4	e7mtwq1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
V	zf-C3HC4	e7mtwV1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
UA [auth p]	zf-C3HC4	e7mtwp1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
U	zf-C3HC4	e7mtwU1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
TA [auth o]	zf-C3HC4	e7mtwo1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
T	zf-C3HC4	e7mtwT1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
SA [auth n]	zf-C3HC4	e7mtwn1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
S	zf-C3HC4	e7mtwS1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
RA [auth m]	zf-C3HC4	e7mtwm1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
R	zf-C3HC4	e7mtwR1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
QA [auth l]	zf-C3HC4	e7mtwl1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
Q	zf-C3HC4	e7mtwQ1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
PA [auth k]	zf-C3HC4	e7mtwk1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
P	zf-C3HC4	e7mtwP1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
OA [auth j]	zf-C3HC4	e7mtwj1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
O	zf-C3HC4	e7mtwO1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
NA [auth i]	zf-C3HC4	e7mtwi1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
N	zf-C3HC4	e7mtwN1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
MA [auth h]	zf-C3HC4	e7mtwh1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
M	zf-C3HC4	e7mtwM1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
LA [auth g]	zf-C3HC4	e7mtwg1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
L	zf-C3HC4	e7mtwL1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
KA [auth f]	zf-C3HC4	e7mtwf1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
K	zf-C3HC4	e7mtwK1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
JA [auth e]	zf-C3HC4	e7mtwe1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
J	zf-C3HC4	e7mtwJ1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
IA [auth d]	zf-C3HC4	e7mtwd1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
I	zf-C3HC4	e7mtwI1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
HA [auth c]	zf-C3HC4	e7mtwc1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
H	zf-C3HC4	e7mtwH1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
GB [auth 8]	zf-C3HC4	e7mtw81	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
GA [auth b]	zf-C3HC4	e7mtwb1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
G	zf-C3HC4	e7mtwG1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
FB [auth 7]	zf-C3HC4	e7mtw71	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
FA [auth a]	zf-C3HC4	e7mtwa1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
F	zf-C3HC4	e7mtwF1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
EB [auth z]	zf-C3HC4	e7mtwz1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
EA [auth 5]	zf-C3HC4	e7mtw51	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
E	zf-C3HC4	e7mtwE1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
DB [auth y]	zf-C3HC4	e7mtwy1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
DA [auth 4]	zf-C3HC4	e7mtw41	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
D	zf-C3HC4	e7mtwD1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
CB [auth x]	zf-C3HC4	e7mtwx1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
CA [auth 3]	zf-C3HC4	e7mtw31	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
C	zf-C3HC4	e7mtwC1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
BB [auth w]	zf-C3HC4	e7mtww1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
BA [auth 2]	zf-C3HC4	e7mtw21	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
B	zf-C3HC4	e7mtwB1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
AB [auth v]	zf-C3HC4	e7mtwv1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
AA [auth 1]	zf-C3HC4	e7mtw11	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)
A	zf-C3HC4	e7mtwA1	A: alpha arrays	X: CNF1/YfiH-like putative cysteine hydrolases	H: RIFT-related	T: FMN-binding split barrel 2	F: zf-C3HC4	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	Capsid protein VP1	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth 1], AB [auth v], B, BA [auth 2], A, AA [auth 1], AB [auth v], B, BA [auth 2], BB [auth w], C, CA [auth 3], CB [auth x], D, DA [auth 4], DB [auth y], E, EA [auth 5], EB [auth z], F, FA [auth a], FB [auth 7], G, GA [auth b], GB [auth 8], H, HA [auth c], I, IA [auth d], J, JA [auth e], K, KA [auth f], L, LA [auth g], M, MA [auth h], N, NA [auth i], O, OA [auth j], P, PA [auth k], Q, QA [auth l], R, RA [auth m], S, SA [auth n], T, TA [auth o], U, UA [auth p], V, VA [auth q], W, WA [auth r], X, XA [auth s], Y, YA [auth t], Z, ZA [auth u]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.