7MTA
Rhodopsin kinase (GRK1)-S5E/S488E/T489E in complex with rhodopsin and Fab1
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth R] | SCOP2B Superfamily | G protein-coupled receptor-like | 8042778 | 3000473 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth G] | Pkinase_Tyr | e7mtaG1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: Protein kinase | F: Pkinase_Tyr | ECOD (1.6) |
B [auth H] | V-set_8 | e7mtaH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e7mtaH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth L] | C1-set_4 | e7mtaL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
C [auth L] | V-set | e7mtaL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
D [auth R] | 7tm_1 | e7mtaR1 | A: alpha bundles | X: Family A G protein-coupled receptor-like (From Topology) | H: Family A G protein-coupled receptor-like (From Topology) | T: Family A G protein-coupled receptor-like | F: 7tm_1 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth H] | Heavy Chain | IGHV3 | - | rhodopsin kinase grk1 | SAbDab (2024-08-16) |
C [auth L] | Light Chain | IGKV1 | Kappa | rhodopsin kinase grk1 | SAbDab (2024-08-16) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth G] | PF00069 | Protein kinase domain (Pkinase) | Protein kinase domain | - | Domain |
D [auth R] | PF00001 | 7 transmembrane receptor (rhodopsin family) (7tm_1) | 7 transmembrane receptor (rhodopsin family) | - | Family |
D [auth R] | PF10413 | Amino terminal of the G-protein receptor rhodopsin (Rhodopsin_N) | Amino terminal of the G-protein receptor rhodopsin | Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes, as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth G] | IPR016137 | RGS domain | Domain |
A [auth G] | IPR037716 | Rhodopsin kinase, catalytic domain | Domain |
A [auth G] | IPR017441 | Protein kinase, ATP binding site | Binding Site |
A [auth G] | IPR036305 | RGS domain superfamily | Homologous Superfamily |
A [auth G] | IPR044926 | RGS, subdomain 2 | Homologous Superfamily |
A [auth G] | IPR011009 | Protein kinase-like domain superfamily | Homologous Superfamily |
A [auth G] | IPR000719 | Protein kinase domain | Domain |
A [auth G] | IPR000961 | AGC-kinase, C-terminal | Domain |
A [auth G] | IPR000239 | GPCR kinase | Family |
A [auth G] | IPR008271 | Serine/threonine-protein kinase, active site | Active Site |
D [auth R] | IPR027430 | Visual pigments (opsins) retinal binding site | Binding Site |
D [auth R] | IPR000276 | G protein-coupled receptor, rhodopsin-like | Family |
D [auth R] | IPR050125 | G-protein coupled receptor opsins | Family |
D [auth R] | IPR017452 | GPCR, rhodopsin-like, 7TM | Domain |
D [auth R] | IPR000732 | Rhodopsin | Family |
D [auth R] | IPR019477 | Rhodopsin, N-terminal | Domain |
D [auth R] | IPR001760 | Opsin | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | G-protein coupled receptors, family A |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | G Protein-Coupled Receptors: Class A | Rhodopsin in complex with rhodopsin kinase (GRK1) |