7MDL
High-resolution crystal structure of human SepSecS-tRNASec complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | PLP-dependent transferases | 8086500 | 3000954 | SCOP2B (2021-05-27) |
A | SCOP2B Superfamily | PLP-dependent transferases | 8086500 | 3000954 | SCOP2B (2021-05-27) |
B | SCOP2B Superfamily | PLP-dependent transferases | 8086500 | 3000954 | SCOP2B (2021-05-27) |
D | SCOP2B Superfamily | PLP-dependent transferases | 8086500 | 3000954 | SCOP2B (2021-05-27) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF05889 | e7mdlC1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
C | PF05889 | e7mdlC2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
A | PF05889 | e7mdlA1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
A | PF05889 | e7mdlA2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
B | PF05889 | e7mdlB1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
B | PF05889 | e7mdlB2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
D | PF05889 | e7mdlD1 | A: a+b two layers | X: C-terminal domain in some PLP-dependent transferases (From Topology) | H: C-terminal domain in some PLP-dependent transferases (From Topology) | T: C-terminal domain in some PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
D | PF05889 | e7mdlD2 | A: a/b three-layered sandwiches | X: PLP-dependent transferases (From Topology) | H: PLP-dependent transferases (From Topology) | T: PLP-dependent transferases | F: PF05889 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05889 | O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS (SepSecS) | O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS | Early annotation suggested this family, SepSecS, of several eukaryotic and archaeal proteins, was involved in antigen-antibodies responses in the liver and pancreas [1,2]. Structural studies show that the family is O-phosphoseryl-tRNA(Sec) selenium t ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015424 | Pyridoxal phosphate-dependent transferase | Homologous Superfamily | |
IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | Homologous Superfamily | |
IPR019793 | Peroxidases heam-ligand binding site | Binding Site | |
IPR008829 | SepSecS/SepCysS family | Family | |
IPR019872 | O-phosphoseryl-tRNA(Sec) selenium transferase | Family |