7MDI
Structure of the Neisseria gonorrhoeae ribonucleotide reductase in the inactive state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B [auth E] | SCOP2B Superfamily | Ferritin-like | 8106304 | 3001658 | SCOP2B (2022-06-29) |
D [auth G] | SCOP2B Superfamily | Ferritin-like | 8106304 | 3001658 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Ferritin-like | 8106304 | 3001658 | SCOP2B (2022-06-29) |
H | SCOP2 Family | Ribonucleotide reductase-like | 8106303 | 4000846 | SCOP2 (2022-06-29) |
H | SCOP2 Superfamily | Ferritin-like | 8106304 | 3001658 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ATP-cone_1 | e7mdiA3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
A | Ribonuc_red_lgN | e7mdiA2 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
A | Ribonuc_red_lgC | e7mdiA1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
C [auth B] | ATP-cone_1 | e7mdiB3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
C [auth B] | Ribonuc_red_lgN | e7mdiB2 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
C [auth B] | Ribonuc_red_lgC | e7mdiB1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
E [auth D] | ATP-cone_1 | e7mdiD3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
E [auth D] | Ribonuc_red_lgN | e7mdiD2 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
E [auth D] | Ribonuc_red_lgC | e7mdiD1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
G [auth C] | ATP-cone_1 | e7mdiC3 | A: alpha arrays | X: RuvA-C | H: ATP cone (From Topology) | T: ATP cone | F: ATP-cone_1 | ECOD (1.6) |
G [auth C] | Ribonuc_red_lgN | e7mdiC2 | A: alpha arrays | X: Alpha helical domain of ribonucleotide reductases (From Topology) | H: Alpha helical domain of ribonucleotide reductases (From Topology) | T: Alpha helical domain of ribonucleotide reductases | F: Ribonuc_red_lgN | ECOD (1.6) |
G [auth C] | Ribonuc_red_lgC | e7mdiC1 | A: a/b barrels | X: Ten stranded beta/alpha barrel (From Topology) | H: Ten stranded beta/alpha barrel (From Topology) | T: Ten stranded beta/alpha barrel | F: Ribonuc_red_lgC | ECOD (1.6) |
B [auth E] | Ribonuc_red_sm | e7mdiE1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
D [auth G] | Ribonuc_red_sm | e7mdiG1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
F | Ribonuc_red_sm | e7mdiF1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
H | Ribonuc_red_sm | e7mdiH1 | A: alpha bundles | X: Ferritin/Heme oxygenase/4-helical cytokines | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribonuc_red_sm | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth D], G [auth C] | PF02867 | Ribonucleotide reductase, barrel domain (Ribonuc_red_lgC) | Ribonucleotide reductase, barrel domain | - | Family |
A, C [auth B], E [auth D], G [auth C] | PF00317 | Ribonucleotide reductase, all-alpha domain (Ribonuc_red_lgN) | Ribonucleotide reductase, all-alpha domain | - | Domain |
A, C [auth B], E [auth D], G [auth C] | PF03477 | ATP cone domain (ATP-cone) | ATP cone domain | - | Domain |
B [auth E], D [auth G], F, H | PF00268 | Ribonucleotide reductase, small chain (Ribonuc_red_sm) | Ribonucleotide reductase, small chain | - | Domain |