7M7E
6-Deoxyerythronolide B synthase (DEBS) hybrid module (M3/1) in complex with antibody fragment 1B2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Thiolase-like | 8055829 | 3000122 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | KASAT domain-like | 8055827 | 3002319 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | FabD/lysophospholipase-like | 8055831 | 3001121 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | Probable ACP-binding domain of malonyl-CoA ACP transacylase | 8055834 | 3001224 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | FabD/lysophospholipase-like | 8055831 | 3001121 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | KASAT domain-like | 8055827 | 3002319 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | FabD/lysophospholipase-like | 8055831 | 3001121 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | FabD/lysophospholipase-like | 8055831 | 3001121 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Probable ACP-binding domain of malonyl-CoA ACP transacylase | 8055834 | 3001224 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Thiolase-like | 8055829 | 3000122 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | KASAT domain-like | 8055827 | 3002319 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | KASAT domain-like | 8055827 | 3002319 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF00698 | e7m7eB4 | A: a+b two layers | X: Alpha-beta plaits | H: Probable ACP-binding domain of malonyl-CoA ACP transacylase (From Topology) | T: Probable ACP-binding domain of malonyl-CoA ACP transacylase | F: PF00698 | ECOD (1.6) |
A [auth B] | PF22621 | e7m7eB3 | A: a+b two layers | X: KS-MAT linker domain in fatty acid synthase (From Topology) | H: KS-MAT linker domain in fatty acid synthase (From Topology) | T: KS-MAT linker domain in fatty acid synthase | F: PF22621 | ECOD (1.6) |
A [auth B] | PF00698 | e7m7eB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF00698 | ECOD (1.6) |
A [auth B] | PF00109 | e7m7eB1 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: PF00109 | ECOD (1.6) |
A [auth B] | PF02801 | e7m7eB5 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: PF02801 | ECOD (1.6) |
B [auth A] | PF00698 | e7m7eA4 | A: a+b two layers | X: Alpha-beta plaits | H: Probable ACP-binding domain of malonyl-CoA ACP transacylase (From Topology) | T: Probable ACP-binding domain of malonyl-CoA ACP transacylase | F: PF00698 | ECOD (1.6) |
B [auth A] | PF22621 | e7m7eA1 | A: a+b two layers | X: KS-MAT linker domain in fatty acid synthase (From Topology) | H: KS-MAT linker domain in fatty acid synthase (From Topology) | T: KS-MAT linker domain in fatty acid synthase | F: PF22621 | ECOD (1.6) |
B [auth A] | PF00698 | e7m7eA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF00698 | ECOD (1.6) |
B [auth A] | PF00109 | e7m7eA5 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: PF00109 | ECOD (1.6) |
B [auth A] | PF02801 | e7m7eA3 | A: a/b three-layered sandwiches | X: Thiolase-like (From Topology) | H: Thiolase-like (From Topology) | T: Thiolase-like | F: PF02801 | ECOD (1.6) |
C | PF07654 | e7m7eC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
C | PF07686 | e7m7eC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
D | PF07654 | e7m7eD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
D | PF07686 | e7m7eD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV3 | - | 6-deoxyerythronolide-b synthase erya2, modules 3 and 4,eryai,6-deoxyerythronolide-b synthase erya3, modules 5 and 6 chimera | 6-deoxyerythronolide-b synthase erya2, modules 3 and 4,eryai,6-deoxyerythronolide-b synthase erya3, modules 5 and 6 chimera | SAbDab (2024-08-02) | |
Light Chain | IGKV2 | Kappa | 6-deoxyerythronolide-b synthase erya2, modules 3 and 4,eryai,6-deoxyerythronolide-b synthase erya3, modules 5 and 6 chimera | 6-deoxyerythronolide-b synthase erya2, modules 3 and 4,eryai,6-deoxyerythronolide-b synthase erya3, modules 5 and 6 chimera | SAbDab (2024-08-02) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF02801 | Beta-ketoacyl synthase, C-terminal domain (Ketoacyl-synt_C) | Beta-ketoacyl synthase, C-terminal domain | The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. | Domain |
A [auth B], B [auth A] | PF00109 | Beta-ketoacyl synthase, N-terminal domain (ketoacyl-synt) | Beta-ketoacyl synthase, N-terminal domain | The structure of beta-ketoacyl synthase is similar to that of the thiolase family (Pfam:PF00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains m ... | Domain |
A [auth B], B [auth A] | PF16197 | Ketoacyl-synthetase C-terminal extension (KAsynt_C_assoc) | Ketoacyl-synthetase C-terminal extension | - | Family |
A [auth B], B [auth A] | PF08990 | Erythronolide synthase docking domain (Docking) | Erythronolide synthase docking domain | Polyketide synthase (PKS) catalyzes the biosynthesis of polyketides, which are structurally and functionally diverse natural products in microorganisms and plants [1]. Type I modular PKSs are the large, multifunctional enzymes responsible for the pro ... | Domain |
A [auth B], B [auth A] | PF00698 | Acyl transferase domain (Acyl_transf_1) | Acyl transferase domain | - | Domain |