7LIH
CryoEM structure of Mayaro virus icosahedral subunit
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth F] | PF00944 | e7lihF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
D [auth A] | PF00944 | e7lihA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
G [auth B] | PF00944 | e7lihB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
J [auth C] | PF00944 | e7lihC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: PF00944 | ECOD (1.6) |
B [auth T] | PF01589 | e7lihT2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF01589 | ECOD (1.6) |
B [auth T] | PF01589 | e7lihT1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF01589 | ECOD (1.6) |
B [auth T] | PF01589 | e7lihT3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: PF01589 | ECOD (1.6) |
E [auth H] | PF01589 | e7lihH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF01589 | ECOD (1.6) |
E [auth H] | PF01589 | e7lihH1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF01589 | ECOD (1.6) |
E [auth H] | PF01589 | e7lihH3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: PF01589 | ECOD (1.6) |
H [auth I] | PF01589 | e7lihI2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF01589 | ECOD (1.6) |
H [auth I] | PF01589 | e7lihI1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF01589 | ECOD (1.6) |
H [auth I] | PF01589 | e7lihI3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: PF01589 | ECOD (1.6) |
K [auth J] | PF01589 | e7lihJ2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF01589 | ECOD (1.6) |
K [auth J] | PF01589 | e7lihJ1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF01589 | ECOD (1.6) |
K [auth J] | PF01589 | e7lihJ3 | A: extended segments | X: Transmembrane helix of E1 envelope glycoprotein (From Topology) | H: Transmembrane helix of E1 envelope glycoprotein (From Topology) | T: Transmembrane helix of E1 envelope glycoprotein | F: PF01589 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth F], D [auth A], G [auth B], J [auth C] | PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain |
B [auth T], E [auth H], H [auth I], K [auth J] | PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family |
C [auth M], F [auth D], I [auth E], L [auth G] | PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Alphavirus E1 glycoprotein |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |