7L8A
BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-1 from animal Rh.33104 (Wk26 time point)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | gp120 core | 8080371 | 3001390 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Virus ectodomain | 8085614 | 3001628 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | GP120_2nd | e7l8aE1 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
A [auth E] | GP120_3rd | e7l8aE2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
A [auth E] | GP120_1st | e7l8aE3 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
E [auth A] | GP120_2nd | e7l8aA3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
E [auth A] | GP120_3rd | e7l8aA2 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
E [auth A] | GP120_1st | e7l8aA1 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
G [auth C] | GP120_2nd | e7l8aC3 | A: beta barrels | X: V1/V2 domain in HIV gp120 (From Topology) | H: V1/V2 domain in HIV gp120 (From Topology) | T: V1/V2 domain in HIV gp120 | F: GP120_2nd | ECOD (1.6) |
G [auth C] | GP120_3rd | e7l8aC1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: GP120_3rd | ECOD (1.6) |
G [auth C] | GP120_1st | e7l8aC2 | A: a+b two layers | X: gp120 inner domain (From Topology) | H: gp120 inner domain (From Topology) | T: gp120 inner domain | F: GP120_1st | ECOD (1.6) |
B [auth F] | GP41_1st | e7l8aF1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
F [auth B] | GP41_1st | e7l8aB1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
H [auth D] | GP41_1st | e7l8aD1 | A: a+b duplicates or obligate multimers | X: MPER trimer (From Topology) | H: MPER trimer (From Topology) | T: MPER trimer | F: GP41_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], E [auth A], G [auth C] | PF00516 | Envelope glycoprotein GP120 (GP120) | Envelope glycoprotein GP120 | - | Family |
B [auth F], F [auth B], H [auth D] | PF00517 | Retroviral envelope protein (GP41) | Retroviral envelope protein | - | Family |