7L88

BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-3 from animal Rh.32034 (Wk26 time point)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
C [auth A]SCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
E [auth C]SCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
B [auth F]SCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]GP120_2nde7l88D3 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: GP120_2ndECOD (1.6)
A [auth D]GP120_3rde7l88D1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: GP120_3rdECOD (1.6)
A [auth D]GP120_1ste7l88D2 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: GP120_1stECOD (1.6)
C [auth A]GP120_2nde7l88A2 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: GP120_2ndECOD (1.6)
C [auth A]GP120_3rde7l88A1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: GP120_3rdECOD (1.6)
C [auth A]GP120_1ste7l88A3 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: GP120_1stECOD (1.6)
E [auth C]GP120_2nde7l88C3 A: beta barrelsX: V1/V2 domain in HIV gp120 (From Topology)H: V1/V2 domain in HIV gp120 (From Topology)T: V1/V2 domain in HIV gp120F: GP120_2ndECOD (1.6)
E [auth C]GP120_3rde7l88C2 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: GP120_3rdECOD (1.6)
E [auth C]GP120_1ste7l88C1 A: a+b two layersX: gp120 inner domain (From Topology)H: gp120 inner domain (From Topology)T: gp120 inner domainF: GP120_1stECOD (1.6)
B [auth F]GP41_1ste7l88F1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: GP41_1stECOD (1.6)
D [auth B]GP41_1ste7l88B1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: GP41_1stECOD (1.6)
F [auth E]GP41_1ste7l88E1 A: a+b duplicates or obligate multimersX: MPER trimer (From Topology)H: MPER trimer (From Topology)T: MPER trimerF: GP41_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D],
C [auth A],
E [auth C]
PF00516Envelope glycoprotein GP120 (GP120)Envelope glycoprotein GP120- Family
B [auth F],
D [auth B],
F [auth E]
PF00517Retroviral envelope protein (GP41)Retroviral envelope protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
C [auth A],
E [auth C]
BG505 SOSIP MD39 - gp120
B [auth F],
D [auth B],
F [auth E]
BG505 SOSIP MD39 - gp41
G [auth H]Rh.32034 pAbC-3 - Heavy Chain---
H [auth L]Rh.32034 pAbC-3 - Light Chain---