7KZZ
Cryo-EM structure of YiiP-Fab complex in Holo state
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Cation_efflux | e7kzzB2 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: Cation_efflux | ECOD (1.6) |
A [auth B] | ZT_dimer | e7kzzB1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: ZT_dimer | ECOD (1.6) |
D [auth A] | Cation_efflux | e7kzzA2 | A: alpha bundles | X: Cation efflux protein transmembrane domain-like (From Topology) | H: Cation efflux protein transmembrane domain-like (From Topology) | T: Cation efflux protein transmembrane domain-like | F: Cation_efflux | ECOD (1.6) |
D [auth A] | ZT_dimer | e7kzzA1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: Cation efflux protein cytoplasmic domain-like (From Topology) | T: Cation efflux protein cytoplasmic domain-like | F: ZT_dimer | ECOD (1.6) |
B [auth E] | C1-set_4 | e7kzzE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
B [auth E] | V-set | e7kzzE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth C] | C1-set_4 | e7kzzC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
E [auth C] | V-set | e7kzzC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth F] | V-set_8 | e7kzzF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
C [auth F] | C1-set_1 | e7kzzF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
F [auth D] | V-set_8 | e7kzzD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
F [auth D] | C1-set_1 | e7kzzD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
B [auth E], E [auth C] | Light Chain | IGKV1 | Kappa | cadmium and zinc efflux pump fief | SAbDab (2024-09-13) |
C [auth F], F [auth D] | Heavy Chain | IGHV3 | - | cadmium and zinc efflux pump fief | SAbDab (2024-09-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], D [auth A] | PF16916 | Dimerisation domain of Zinc Transporter (ZT_dimer) | Dimerisation domain of Zinc Transporter | ZT_dimer is the dimerisation region of the whole molecule of zinc transporters since the full-length members form a homodimer during activity. The domain lies within the cytoplasm and exhibits an overall structural similarity with the copper metalloc ... | Domain |
A [auth B], D [auth A] | PF01545 | Cation efflux family (Cation_efflux) | Cation efflux family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], D [auth A] | IPR002524 | Cation efflux protein | Family |
A [auth B], D [auth A] | IPR027470 | Cation efflux protein, cytoplasmic domain | Domain |
A [auth B], D [auth A] | IPR036837 | Cation efflux protein, cytoplasmic domain superfamily | Homologous Superfamily |
A [auth B], D [auth A] | IPR050291 | Cation Diffusion Facilitator Transporter | Family |
A [auth B], D [auth A] | IPR027469 | Cation efflux transmembrane domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Cation diffusion facilitator | Bacterial zinc transporters |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |