7KNF
1.80A resolution structure of independent Phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (Ce-1 NHOH)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Metalloenzyme | e7knfA2 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like (From Topology) | H: Alkaline phosphatase-like (From Topology) | T: Alkaline phosphatase-like | F: Metalloenzyme | ECOD (1.6) |
A | iPGM_N | e7knfA1 | A: a/b three-layered sandwiches | X: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain (From Topology) | H: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain (From Topology) | T: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | F: iPGM_N | ECOD (1.6) |
B | Metalloenzyme | e7knfB1 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like (From Topology) | H: Alkaline phosphatase-like (From Topology) | T: Alkaline phosphatase-like | F: Metalloenzyme | ECOD (1.6) |
B | iPGM_N | e7knfB2 | A: a/b three-layered sandwiches | X: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain (From Topology) | H: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain (From Topology) | T: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain | F: iPGM_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01676 | Metalloenzyme superfamily (Metalloenzyme) | Metalloenzyme superfamily | - | Family | |
PF06415 | BPG-independent PGAM N-terminus (iPGM_N) (iPGM_N) | BPG-independent PGAM N-terminus (iPGM_N) | This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with Pfam:PF01676 (located in t ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011258 | BPG-independent PGAM, N-terminal | Domain | |
IPR036646 | BPG-independent phosphoglycerate mutase, domain B superfamily | Homologous Superfamily | |
IPR005995 | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | Family | |
IPR006124 | Metalloenzyme | Domain | |
IPR017850 | Alkaline-phosphatase-like, core domain superfamily | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :  |
DTY | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 | :  |
HOA | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 | :  |
CSO | Parent Component: CYS :  AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 , AA0205 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 , L-cysteine sulfenic acid MOD:00210 |